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Cluster: Rep_2695_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2695_c_29 Rep_2695_c_29_3 2466 3365 - 3.A.1.124.6
TF Rep_2695_c_29 Rep_2695_c_29_4 3362 3733 - GntR
sulfatase Rep_2695_c_29 Rep_2695_c_29_5 3886 5721 + S1_97
CAZyme Rep_2695_c_29 Rep_2695_c_29_6 5880 8843 + GT51
TC Rep_2695_c_29 Rep_2695_c_29_7 8900 9688 - 3.A.1.34.1
TC Rep_2695_c_29 Rep_2695_c_29_8 9675 10574 - 3.A.1.34.1
pfam Rep_2695_c_29 Rep_2695_c_29_9 10583 11656 - ABC_sub_bind
TC Rep_2695_c_29 Rep_2695_c_29_10 12057 13406 - 2.A.66.1.32
NULL(UNKNOWN) Rep_2695_c_29 Rep_2695_c_29_11 13410 14690 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2695_c_29 Rep_2695_c_29_12 14684 16408 - 8.A.7.1.1
TC Rep_2695_c_29 Rep_2695_c_29_13 16422 16691 - 8.A.8.1.5
Gene ID: Rep_2695_c_29_3
Type: TC
Location: 2466 - 3365 (-)
Gene ID: Rep_2695_c_29_4
Type: TF
Location: 3362 - 3733 (-)
Gene ID: Rep_2695_c_29_5
Type: sulfatase
Location: 3886 - 5721 (+)
Gene ID: Rep_2695_c_29_6
Type: CAZyme
Location: 5880 - 8843 (+)
Gene ID: Rep_2695_c_29_7
Type: TC
Location: 8900 - 9688 (-)
Gene ID: Rep_2695_c_29_8
Type: TC
Location: 9675 - 10574 (-)
Gene ID: Rep_2695_c_29_9
Type: pfam
Location: 10583 - 11656 (-)
Gene ID: Rep_2695_c_29_10
Type: TC
Location: 12057 - 13406 (-)
Gene ID: Rep_2695_c_29_11
Type:
Location: 13410 - 14690 (-)
Gene ID: Rep_2695_c_29_12
Type: TC
Location: 14684 - 16408 (-)
Gene ID: Rep_2695_c_29_13
Type: TC
Location: 16422 - 16691 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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