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Cluster: Rep_265_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_265_c_231 Rep_265_c_231_2 1514 3820 + GH88 | PL38
CAZyme Rep_265_c_231 Rep_265_c_231_3 3873 5105 + GH5_46
CAZyme Rep_265_c_231 Rep_265_c_231_4 5164 7395 + GH3
CAZyme Rep_265_c_231 Rep_265_c_231_5 7409 9754 + GH3
pfam Rep_265_c_231 Rep_265_c_231_6 9905 11566 + DUF6377
TC Rep_265_c_231 Rep_265_c_231_7 11563 13914 - 9.B.14.3.1
pfam Rep_265_c_231 Rep_265_c_231_8 14082 15803 - DHOR
peptidase Rep_265_c_231 Rep_265_c_231_9 15952 17313 - M75.UPW
TC Rep_265_c_231 Rep_265_c_231_10 17459 18772 - 1.B.3.3.1
Gene ID: Rep_265_c_231_2
Type: CAZyme
Location: 1514 - 3820 (+)
Gene ID: Rep_265_c_231_3
Type: CAZyme
Location: 3873 - 5105 (+)
Gene ID: Rep_265_c_231_4
Type: CAZyme
Location: 5164 - 7395 (+)
Gene ID: Rep_265_c_231_5
Type: CAZyme
Location: 7409 - 9754 (+)
Gene ID: Rep_265_c_231_6
Type: pfam
Location: 9905 - 11566 (+)
Gene ID: Rep_265_c_231_7
Type: TC
Location: 11563 - 13914 (-)
Gene ID: Rep_265_c_231_8
Type: pfam
Location: 14082 - 15803 (-)
Gene ID: Rep_265_c_231_9
Type: peptidase
Location: 15952 - 17313 (-)
Gene ID: Rep_265_c_231_10
Type: TC
Location: 17459 - 18772 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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