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Cluster: Rep_265_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_265_c_217 Rep_265_c_217_2 393 3404 + PL1
pfam Rep_265_c_217 Rep_265_c_217_3 3896 4501 + Lum_binding | Lum_binding
pfam Rep_265_c_217 Rep_265_c_217_4 4842 6185 + OEP | OEP
TC Rep_265_c_217 Rep_265_c_217_5 6283 7461 + 8.A.1.2.2
TC Rep_265_c_217 Rep_265_c_217_6 7468 8223 + 3.A.1.122.2
TC Rep_265_c_217 Rep_265_c_217_7 8255 9493 + 3.A.1.122.1
pfam Rep_265_c_217 Rep_265_c_217_8 9486 10559 + His_kinase
TF Rep_265_c_217 Rep_265_c_217_9 10531 11247 + LytTR
TC Rep_265_c_217 Rep_265_c_217_10 11388 11990 - 3.D.6.1.2
TC Rep_265_c_217 Rep_265_c_217_11 11994 12419 - 3.D.6.1.2
Gene ID: Rep_265_c_217_2
Type: CAZyme
Location: 393 - 3404 (+)
Gene ID: Rep_265_c_217_3
Type: pfam
Location: 3896 - 4501 (+)
Gene ID: Rep_265_c_217_4
Type: pfam
Location: 4842 - 6185 (+)
Gene ID: Rep_265_c_217_5
Type: TC
Location: 6283 - 7461 (+)
Gene ID: Rep_265_c_217_6
Type: TC
Location: 7468 - 8223 (+)
Gene ID: Rep_265_c_217_7
Type: TC
Location: 8255 - 9493 (+)
Gene ID: Rep_265_c_217_8
Type: pfam
Location: 9486 - 10559 (+)
Gene ID: Rep_265_c_217_9
Type: TF
Location: 10531 - 11247 (+)
Gene ID: Rep_265_c_217_10
Type: TC
Location: 11388 - 11990 (-)
Gene ID: Rep_265_c_217_11
Type: TC
Location: 11994 - 12419 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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