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Cluster: Rep_2658_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2658_c_0 Rep_2658_c_0_109 107927 109552 - GH110
TC Rep_2658_c_0 Rep_2658_c_0_110 110243 111328 - 3.A.1.2.3
TC Rep_2658_c_0 Rep_2658_c_0_111 111378 112886 - 3.A.1.2.3
TC Rep_2658_c_0 Rep_2658_c_0_112 112988 114064 - 3.A.1.2.3
pfam Rep_2658_c_0 Rep_2658_c_0_113 114352 115080 - adh_short | Epimerase | adh_short_C2 | SDR
CAZyme Rep_2658_c_0 Rep_2658_c_0_114 115102 116448 - GH10
CAZyme Rep_2658_c_0 Rep_2658_c_0_115 116483 117784 - GH13
Gene ID: Rep_2658_c_0_109
Type: CAZyme
Location: 107927 - 109552 (-)
Gene ID: Rep_2658_c_0_110
Type: TC
Location: 110243 - 111328 (-)
Gene ID: Rep_2658_c_0_111
Type: TC
Location: 111378 - 112886 (-)
Gene ID: Rep_2658_c_0_112
Type: TC
Location: 112988 - 114064 (-)
Gene ID: Rep_2658_c_0_113
Type: pfam
Location: 114352 - 115080 (-)
Gene ID: Rep_2658_c_0_114
Type: CAZyme
Location: 115102 - 116448 (-)
Gene ID: Rep_2658_c_0_115
Type: CAZyme
Location: 116483 - 117784 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
CAG-382
→
Genus
UMGS882
→
Species
UMGS882 sp900546385

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2658_c_0_110 vegetarian > omnivore 1.14053 0.04753
Rep_2658_c_0_113 vegetarian > vegan 1.48535 0.03687

🧭 Explore Read Mapping of CGC

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