Cluster: Rep_2616_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2616
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2616_c_0 | Rep_2616_c_0_1390 | 1523152 | 1524279 | + | CE9 |
| pfam | Rep_2616_c_0 | Rep_2616_c_0_1391 | 1524438 | 1525400 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| TF | Rep_2616_c_0 | Rep_2616_c_0_1392 | 1525533 | 1525751 | + | SpoVT_AbrB |
| TC | Rep_2616_c_0 | Rep_2616_c_0_1393 | 1525738 | 1526580 | + | 3.A.1.149.1 |
Gene ID: Rep_2616_c_0_1390
Type: CAZyme
Location: 1523152 - 1524279 (+)
Type: CAZyme
Location: 1523152 - 1524279 (+)
Gene ID: Rep_2616_c_0_1391
Type: pfam
Location: 1524438 - 1525400 (+)
Type: pfam
Location: 1524438 - 1525400 (+)
Gene ID: Rep_2616_c_0_1392
Type: TF
Location: 1525533 - 1525751 (+)
Type: TF
Location: 1525533 - 1525751 (+)
Gene ID: Rep_2616_c_0_1393
Type: TC
Location: 1525738 - 1526580 (+)
Type: TC
Location: 1525738 - 1526580 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-917
Genus
CAG-349
Species
CAG-349 sp003539515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2616_c_0_1390 | vegetarian > vegan | 2.11019 | 0.01332 |
| Rep_2616_c_0_1391 | vegetarian > vegan | 1.35063 | 0.01332 |
| Rep_2616_c_0_1392 | vegetarian > vegan | 20.30491 | 0.01332 |
| Rep_2616_c_0_1393 | vegetarian > vegan | 19.55121 | 0.01332 |