Cluster: Rep_2616_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: Rep_2616
- CGC Family ID: CGCFAM_00004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2616_c_0 | Rep_2616_c_0_1332 | 1452697 | 1453857 | - | 3.A.11.1.1 |
| TF | Rep_2616_c_0 | Rep_2616_c_0_1333 | 1453847 | 1454056 | - | HTH_3 |
| TC | Rep_2616_c_0 | Rep_2616_c_0_1334 | 1454219 | 1456195 | - | 2.A.1.2.88 |
| pfam | Rep_2616_c_0 | Rep_2616_c_0_1335 | 1456408 | 1456959 | - | Rubrerythrin | RUBY_RBDX |
| TF | Rep_2616_c_0 | Rep_2616_c_0_1336 | 1456987 | 1457364 | - | FUR |
| CAZyme | Rep_2616_c_0 | Rep_2616_c_0_1337 | 1457462 | 1459285 | - | GH13_39 |
| CAZyme | Rep_2616_c_0 | Rep_2616_c_0_1338 | 1459287 | 1461722 | - | GT35 |
| CAZyme | Rep_2616_c_0 | Rep_2616_c_0_1339 | 1461763 | 1463187 | - | GT5 |
| pfam | Rep_2616_c_0 | Rep_2616_c_0_1340 | 1463232 | 1464350 | - | NTP_transferase | Hexapep_GlmU |
| pfam | Rep_2616_c_0 | Rep_2616_c_0_1341 | 1464343 | 1465551 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | Rep_2616_c_0 | Rep_2616_c_0_1342 | 1465563 | 1467446 | - | CBM48 | GH13_9 |
Gene ID: Rep_2616_c_0_1332
Type: TC
Location: 1452697 - 1453857 (-)
Type: TC
Location: 1452697 - 1453857 (-)
Gene ID: Rep_2616_c_0_1333
Type: TF
Location: 1453847 - 1454056 (-)
Type: TF
Location: 1453847 - 1454056 (-)
Gene ID: Rep_2616_c_0_1334
Type: TC
Location: 1454219 - 1456195 (-)
Type: TC
Location: 1454219 - 1456195 (-)
Gene ID: Rep_2616_c_0_1335
Type: pfam
Location: 1456408 - 1456959 (-)
Type: pfam
Location: 1456408 - 1456959 (-)
Gene ID: Rep_2616_c_0_1336
Type: TF
Location: 1456987 - 1457364 (-)
Type: TF
Location: 1456987 - 1457364 (-)
Gene ID: Rep_2616_c_0_1337
Type: CAZyme
Location: 1457462 - 1459285 (-)
Type: CAZyme
Location: 1457462 - 1459285 (-)
Gene ID: Rep_2616_c_0_1338
Type: CAZyme
Location: 1459287 - 1461722 (-)
Type: CAZyme
Location: 1459287 - 1461722 (-)
Gene ID: Rep_2616_c_0_1339
Type: CAZyme
Location: 1461763 - 1463187 (-)
Type: CAZyme
Location: 1461763 - 1463187 (-)
Gene ID: Rep_2616_c_0_1340
Type: pfam
Location: 1463232 - 1464350 (-)
Type: pfam
Location: 1463232 - 1464350 (-)
Gene ID: Rep_2616_c_0_1341
Type: pfam
Location: 1464343 - 1465551 (-)
Type: pfam
Location: 1464343 - 1465551 (-)
Gene ID: Rep_2616_c_0_1342
Type: CAZyme
Location: 1465563 - 1467446 (-)
Type: CAZyme
Location: 1465563 - 1467446 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-917
Genus
CAG-349
Species
CAG-349 sp003539515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2616_c_0_1332 | vegetarian > vegan | 1.88111 | 0.01332 |
| Rep_2616_c_0_1334 | vegetarian > vegan | 4.47046 | 0.01332 |
| Rep_2616_c_0_1338 | vegetarian > omnivore | 1.62371 | 0.02024 |