Cluster: Rep_2616_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2616
- CGC Family ID: CGCFAM_09327
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2616_c_0 | Rep_2616_c_0_183 | 191955 | 194720 | + | 9.A.8.1.6 |
| NULL(UNKNOWN) | Rep_2616_c_0 | Rep_2616_c_0_184 | 194725 | 194940 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2616_c_0 | Rep_2616_c_0_185 | 195028 | 196233 | - | Metalloenzyme | PhosphMutase |
| CAZyme | Rep_2616_c_0 | Rep_2616_c_0_186 | 196386 | 198356 | + | GH127 |
| CAZyme | Rep_2616_c_0 | Rep_2616_c_0_187 | 198646 | 200379 | + | GH2 |
Gene ID: Rep_2616_c_0_183
Type: TC
Location: 191955 - 194720 (+)
Type: TC
Location: 191955 - 194720 (+)
Gene ID: Rep_2616_c_0_184
Type:
Location: 194725 - 194940 (+)
Type:
Location: 194725 - 194940 (+)
Gene ID: Rep_2616_c_0_185
Type: pfam
Location: 195028 - 196233 (-)
Type: pfam
Location: 195028 - 196233 (-)
Gene ID: Rep_2616_c_0_186
Type: CAZyme
Location: 196386 - 198356 (+)
Type: CAZyme
Location: 196386 - 198356 (+)
Gene ID: Rep_2616_c_0_187
Type: CAZyme
Location: 198646 - 200379 (+)
Type: CAZyme
Location: 198646 - 200379 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-917
Genus
CAG-349
Species
CAG-349 sp003539515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2616_c_0_183 | vegetarian > vegan | 1.25221 | 0.01332 |
| Rep_2616_c_0_185 | vegetarian > omnivore | 1.01979 | 0.04676 |
| Rep_2616_c_0_185 | vegetarian > vegan | 1.76351 | 0.01332 |
| Rep_2616_c_0_186 | vegetarian > vegan | 1.87543 | 0.01332 |
| Rep_2616_c_0_187 | vegetarian > omnivore | 2.29263 | 0.02024 |