Cluster: Rep_2603_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2603
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2603_c_1 | Rep_2603_c_1_52 | 58016 | 58900 | + | 3.A.1.7.5 |
| TC | Rep_2603_c_1 | Rep_2603_c_1_53 | 59011 | 59877 | + | 3.A.1.7.5 |
| TC | Rep_2603_c_1 | Rep_2603_c_1_54 | 59874 | 60809 | + | 3.A.1.7.5 |
| TC | Rep_2603_c_1 | Rep_2603_c_1_55 | 60809 | 61612 | + | 3.A.1.7.5 |
| pfam | Rep_2603_c_1 | Rep_2603_c_1_56 | 61612 | 62241 | + | PhoU | PhoU |
| CAZyme | Rep_2603_c_1 | Rep_2603_c_1_57 | 63199 | 65751 | + | GH2 |
| TC | Rep_2603_c_1 | Rep_2603_c_1_58 | 65972 | 68674 | + | 3.A.3.5.15 |
Gene ID: Rep_2603_c_1_52
Type: TC
Location: 58016 - 58900 (+)
Type: TC
Location: 58016 - 58900 (+)
Gene ID: Rep_2603_c_1_53
Type: TC
Location: 59011 - 59877 (+)
Type: TC
Location: 59011 - 59877 (+)
Gene ID: Rep_2603_c_1_54
Type: TC
Location: 59874 - 60809 (+)
Type: TC
Location: 59874 - 60809 (+)
Gene ID: Rep_2603_c_1_55
Type: TC
Location: 60809 - 61612 (+)
Type: TC
Location: 60809 - 61612 (+)
Gene ID: Rep_2603_c_1_56
Type: pfam
Location: 61612 - 62241 (+)
Type: pfam
Location: 61612 - 62241 (+)
Gene ID: Rep_2603_c_1_57
Type: CAZyme
Location: 63199 - 65751 (+)
Type: CAZyme
Location: 63199 - 65751 (+)
Gene ID: Rep_2603_c_1_58
Type: TC
Location: 65972 - 68674 (+)
Type: TC
Location: 65972 - 68674 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-917
Genus
Limadaptatus
Species
Limadaptatus sp900554085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.