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Cluster: Rep_2587_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2587_c_38 Rep_2587_c_38_2 971 1933 + 3.A.1.1.49
TC Rep_2587_c_38 Rep_2587_c_38_3 1946 2836 + 3.A.1.1.11
NULL(UNKNOWN) Rep_2587_c_38 Rep_2587_c_38_4 2707 3009 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2587_c_38 Rep_2587_c_38_5 3125 5017 + GH43
pfam Rep_2587_c_38 Rep_2587_c_38_6 5031 11609 + Flg_new_2
TF Rep_2587_c_38 Rep_2587_c_38_7 11916 12779 - HTH_AraC
CAZyme Rep_2587_c_38 Rep_2587_c_38_8 13012 14073 + GH179
NULL(UNKNOWN) Rep_2587_c_38 Rep_2587_c_38_9 14070 14912 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2587_c_38 Rep_2587_c_38_10 15026 15883 + AP_endonuc_2
CAZyme Rep_2587_c_38 Rep_2587_c_38_11 16284 18683 + GH38
Gene ID: Rep_2587_c_38_2
Type: TC
Location: 971 - 1933 (+)
Gene ID: Rep_2587_c_38_3
Type: TC
Location: 1946 - 2836 (+)
Gene ID: Rep_2587_c_38_4
Type:
Location: 2707 - 3009 (-)
Gene ID: Rep_2587_c_38_5
Type: CAZyme
Location: 3125 - 5017 (+)
Gene ID: Rep_2587_c_38_6
Type: pfam
Location: 5031 - 11609 (+)
Gene ID: Rep_2587_c_38_7
Type: TF
Location: 11916 - 12779 (-)
Gene ID: Rep_2587_c_38_8
Type: CAZyme
Location: 13012 - 14073 (+)
Gene ID: Rep_2587_c_38_9
Type:
Location: 14070 - 14912 (+)
Gene ID: Rep_2587_c_38_10
Type: pfam
Location: 15026 - 15883 (+)
Gene ID: Rep_2587_c_38_11
Type: CAZyme
Location: 16284 - 18683 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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