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Cluster: Rep_2587_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2587_c_16 Rep_2587_c_16_64 68476 70242 - 1.A.11.2.7
pfam Rep_2587_c_16 Rep_2587_c_16_65 70355 72436 - Gln-synt_C | GSIII_N | Gln-synt_C-ter
CAZyme Rep_2587_c_16 Rep_2587_c_16_66 72702 74648 + GH13_9
pfam Rep_2587_c_16 Rep_2587_c_16_67 74645 75826 + NTP_transferase | Hexapep_GlmU
pfam Rep_2587_c_16 Rep_2587_c_16_68 75842 76954 + NTP_transferase | Bactofilin | Hexapep_GlmU
CAZyme Rep_2587_c_16 Rep_2587_c_16_69 77035 78957 + GT5
CAZyme Rep_2587_c_16 Rep_2587_c_16_70 78994 81420 + GT35
CAZyme Rep_2587_c_16 Rep_2587_c_16_71 81425 83200 + GH13_39
TC Rep_2587_c_16 Rep_2587_c_16_72 83326 84702 + 2.A.37.2.2
Gene ID: Rep_2587_c_16_64
Type: TC
Location: 68476 - 70242 (-)
Gene ID: Rep_2587_c_16_65
Type: pfam
Location: 70355 - 72436 (-)
Gene ID: Rep_2587_c_16_66
Type: CAZyme
Location: 72702 - 74648 (+)
Gene ID: Rep_2587_c_16_67
Type: pfam
Location: 74645 - 75826 (+)
Gene ID: Rep_2587_c_16_68
Type: pfam
Location: 75842 - 76954 (+)
Gene ID: Rep_2587_c_16_69
Type: CAZyme
Location: 77035 - 78957 (+)
Gene ID: Rep_2587_c_16_70
Type: CAZyme
Location: 78994 - 81420 (+)
Gene ID: Rep_2587_c_16_71
Type: CAZyme
Location: 81425 - 83200 (+)
Gene ID: Rep_2587_c_16_72
Type: TC
Location: 83326 - 84702 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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