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Cluster: Rep_2587_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2587_c_16 Rep_2587_c_16_28 26052 27533 + 3.A.1.11.8
TC Rep_2587_c_16 Rep_2587_c_16_29 27520 28335 + 3.A.1.11.7
TC Rep_2587_c_16 Rep_2587_c_16_30 28332 29171 + 3.A.1.11.2
TC Rep_2587_c_16 Rep_2587_c_16_31 29311 30534 + 3.A.1.11.7
STP Rep_2587_c_16 Rep_2587_c_16_32 30560 32416 + Pyr_redox_2
pfam Rep_2587_c_16 Rep_2587_c_16_33 32817 33104 + SpoVG
TC Rep_2587_c_16 Rep_2587_c_16_34 33449 35089 - 8.A.7.1.1
pfam Rep_2587_c_16 Rep_2587_c_16_35 35398 35649 - SpoIIID
CAZyme Rep_2587_c_16 Rep_2587_c_16_36 35999 36922 + GH43_32
Gene ID: Rep_2587_c_16_28
Type: TC
Location: 26052 - 27533 (+)
Gene ID: Rep_2587_c_16_29
Type: TC
Location: 27520 - 28335 (+)
Gene ID: Rep_2587_c_16_30
Type: TC
Location: 28332 - 29171 (+)
Gene ID: Rep_2587_c_16_31
Type: TC
Location: 29311 - 30534 (+)
Gene ID: Rep_2587_c_16_32
Type: STP
Location: 30560 - 32416 (+)
Gene ID: Rep_2587_c_16_33
Type: pfam
Location: 32817 - 33104 (+)
Gene ID: Rep_2587_c_16_34
Type: TC
Location: 33449 - 35089 (-)
Gene ID: Rep_2587_c_16_35
Type: pfam
Location: 35398 - 35649 (-)
Gene ID: Rep_2587_c_16_36
Type: CAZyme
Location: 35999 - 36922 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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