Cluster: Rep_257_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_257
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_257_c_80 | Rep_257_c_80_1 | 3 | 1175 | - | GH3 |
| TC | Rep_257_c_80 | Rep_257_c_80_2 | 1661 | 4888 | + | 1.B.14.6.1 |
| pfam | Rep_257_c_80 | Rep_257_c_80_3 | 4910 | 6466 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_257_c_80 | Rep_257_c_80_4 | 6535 | 7947 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_257_c_80 | Rep_257_c_80_5 | 8092 | 9348 | + | GH5_46 |
| CAZyme | Rep_257_c_80 | Rep_257_c_80_6 | 9372 | 10505 | + | GH16_3 |
| CAZyme | Rep_257_c_80 | Rep_257_c_80_7 | 10545 | 12812 | + | GH3 |
Gene ID: Rep_257_c_80_1
Type: CAZyme
Location: 3 - 1175 (-)
Type: CAZyme
Location: 3 - 1175 (-)
Gene ID: Rep_257_c_80_2
Type: TC
Location: 1661 - 4888 (+)
Type: TC
Location: 1661 - 4888 (+)
Gene ID: Rep_257_c_80_3
Type: pfam
Location: 4910 - 6466 (+)
Type: pfam
Location: 4910 - 6466 (+)
Gene ID: Rep_257_c_80_4
Type:
Location: 6535 - 7947 (+)
Type:
Location: 6535 - 7947 (+)
Gene ID: Rep_257_c_80_5
Type: CAZyme
Location: 8092 - 9348 (+)
Type: CAZyme
Location: 8092 - 9348 (+)
Gene ID: Rep_257_c_80_6
Type: CAZyme
Location: 9372 - 10505 (+)
Type: CAZyme
Location: 9372 - 10505 (+)
Gene ID: Rep_257_c_80_7
Type: CAZyme
Location: 10545 - 12812 (+)
Type: CAZyme
Location: 10545 - 12812 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.