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Cluster: Rep_255_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_255_c_237 Rep_255_c_237_5 4344 5786 - 2.A.21.5.3
pfam Rep_255_c_237 Rep_255_c_237_6 6112 7800 - F5_F8_type_C
CAZyme Rep_255_c_237 Rep_255_c_237_7 7845 9092 - GH5_46
NULL(UNKNOWN) Rep_255_c_237 Rep_255_c_237_8 9118 11427 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_255_c_237 Rep_255_c_237_9 11460 12722 - GH5_46
CAZyme Rep_255_c_237 Rep_255_c_237_10 12736 13902 - GH5_13
pfam Rep_255_c_237 Rep_255_c_237_11 13889 15400 - SusD_RagB | SusD-like_2 | SusD-like_3
TC Rep_255_c_237 Rep_255_c_237_12 15423 18713 - 1.B.14.6.1
Gene ID: Rep_255_c_237_5
Type: TC
Location: 4344 - 5786 (-)
Gene ID: Rep_255_c_237_6
Type: pfam
Location: 6112 - 7800 (-)
Gene ID: Rep_255_c_237_7
Type: CAZyme
Location: 7845 - 9092 (-)
Gene ID: Rep_255_c_237_8
Type:
Location: 9118 - 11427 (-)
Gene ID: Rep_255_c_237_9
Type: CAZyme
Location: 11460 - 12722 (-)
Gene ID: Rep_255_c_237_10
Type: CAZyme
Location: 12736 - 13902 (-)
Gene ID: Rep_255_c_237_11
Type: pfam
Location: 13889 - 15400 (-)
Gene ID: Rep_255_c_237_12
Type: TC
Location: 15423 - 18713 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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