Cluster: Rep_255_CGC39
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_255
- CGC Family ID: CGCFAM_09132
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_255_c_167 | Rep_255_c_167_1 | 394 | 873 | + | GT90 |
| pfam | Rep_255_c_167 | Rep_255_c_167_2 | 1238 | 2107 | - | Ligase_CoA | CoA_binding | CoA_binding_2 | Succ_CoA_lig |
| pfam | Rep_255_c_167 | Rep_255_c_167_3 | 2128 | 3267 | - | Ligase_CoA | ATP-grasp_2 | ATP-grasp_5 |
| TC | Rep_255_c_167 | Rep_255_c_167_4 | 3338 | 4714 | - | 2.A.25.1.3 |
Gene ID: Rep_255_c_167_1
Type: CAZyme
Location: 394 - 873 (+)
Type: CAZyme
Location: 394 - 873 (+)
Gene ID: Rep_255_c_167_2
Type: pfam
Location: 1238 - 2107 (-)
Type: pfam
Location: 1238 - 2107 (-)
Gene ID: Rep_255_c_167_3
Type: pfam
Location: 2128 - 3267 (-)
Type: pfam
Location: 2128 - 3267 (-)
Gene ID: Rep_255_c_167_4
Type: TC
Location: 3338 - 4714 (-)
Type: TC
Location: 3338 - 4714 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900315955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_255_c_167_1 | vegetarian > vegan | 1.94558 | 0.01084 |