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Cluster: Rep_255_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_255_c_161 Rep_255_c_161_13 14699 16483 + 3.A.1.106.2
CAZyme Rep_255_c_161 Rep_255_c_161_14 16632 19316 + GH77
CAZyme Rep_255_c_161 Rep_255_c_161_15 19358 21493 + GH97
NULL(UNKNOWN) Rep_255_c_161 Rep_255_c_161_16 21526 21855 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_255_c_161 Rep_255_c_161_17 21852 22127 + ParE_toxin | YoeB_toxin
CAZyme Rep_255_c_161 Rep_255_c_161_18 22194 24233 + GH13_14
TC Rep_255_c_161 Rep_255_c_161_19 24344 25288 + 3.A.1.115.1
pfam Rep_255_c_161 Rep_255_c_161_20 25285 26532 + ABC2_membrane_3
CAZyme Rep_255_c_161 Rep_255_c_161_21 26602 27510 - GT2
CAZyme Rep_255_c_161 Rep_255_c_161_22 27512 29350 - GH13_46
TC Rep_255_c_161 Rep_255_c_161_23 29526 30101 - 2.A.51.1.6
TC Rep_255_c_161 Rep_255_c_161_24 30115 30645 - 2.A.51.1.6
Gene ID: Rep_255_c_161_13
Type: TC
Location: 14699 - 16483 (+)
Gene ID: Rep_255_c_161_14
Type: CAZyme
Location: 16632 - 19316 (+)
Gene ID: Rep_255_c_161_15
Type: CAZyme
Location: 19358 - 21493 (+)
Gene ID: Rep_255_c_161_16
Type:
Location: 21526 - 21855 (+)
Gene ID: Rep_255_c_161_17
Type: pfam
Location: 21852 - 22127 (+)
Gene ID: Rep_255_c_161_18
Type: CAZyme
Location: 22194 - 24233 (+)
Gene ID: Rep_255_c_161_19
Type: TC
Location: 24344 - 25288 (+)
Gene ID: Rep_255_c_161_20
Type: pfam
Location: 25285 - 26532 (+)
Gene ID: Rep_255_c_161_21
Type: CAZyme
Location: 26602 - 27510 (-)
Gene ID: Rep_255_c_161_22
Type: CAZyme
Location: 27512 - 29350 (-)
Gene ID: Rep_255_c_161_23
Type: TC
Location: 29526 - 30101 (-)
Gene ID: Rep_255_c_161_24
Type: TC
Location: 30115 - 30645 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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