Cluster: Rep_255_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_255
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_255_c_71 | Rep_255_c_71_3 | 2237 | 4483 | - | GH3 |
| TC | Rep_255_c_71 | Rep_255_c_71_4 | 4959 | 8189 | + | 1.B.14.6.1 |
| pfam | Rep_255_c_71 | Rep_255_c_71_5 | 8238 | 9788 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| NULL(UNKNOWN) | Rep_255_c_71 | Rep_255_c_71_6 | 9805 | 11205 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_255_c_71 | Rep_255_c_71_7 | 11227 | 12339 | + | GH16_3 |
| CAZyme | Rep_255_c_71 | Rep_255_c_71_8 | 12442 | 14721 | + | GH3 |
Gene ID: Rep_255_c_71_3
Type: CAZyme
Location: 2237 - 4483 (-)
Type: CAZyme
Location: 2237 - 4483 (-)
Gene ID: Rep_255_c_71_4
Type: TC
Location: 4959 - 8189 (+)
Type: TC
Location: 4959 - 8189 (+)
Gene ID: Rep_255_c_71_5
Type: pfam
Location: 8238 - 9788 (+)
Type: pfam
Location: 8238 - 9788 (+)
Gene ID: Rep_255_c_71_6
Type:
Location: 9805 - 11205 (+)
Type:
Location: 9805 - 11205 (+)
Gene ID: Rep_255_c_71_7
Type: CAZyme
Location: 11227 - 12339 (+)
Type: CAZyme
Location: 11227 - 12339 (+)
Gene ID: Rep_255_c_71_8
Type: CAZyme
Location: 12442 - 14721 (+)
Type: CAZyme
Location: 12442 - 14721 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900315955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.