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Cluster: Rep_2546_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2546_c_59 Rep_2546_c_59_22 23369 25843 + GH3
TC Rep_2546_c_59 Rep_2546_c_59_23 25800 27728 + 2.A.2.3.3
pfam Rep_2546_c_59 Rep_2546_c_59_24 27749 28564 + Lipase_GDSL | Lipase_GDSL_2
CAZyme Rep_2546_c_59 Rep_2546_c_59_25 28569 30863 + CBM67 | GH78
pfam Rep_2546_c_59 Rep_2546_c_59_26 30876 31112 + Bac_rhamnosid_C
CAZyme Rep_2546_c_59 Rep_2546_c_59_27 31766 33643 + CBM48 | GH13_9
pfam Rep_2546_c_59 Rep_2546_c_59_28 33708 34913 + NTP_transferase | Hexapep_GlmU
pfam Rep_2546_c_59 Rep_2546_c_59_29 34916 36019 + NTP_transferase | Hexapep_GlmU
CAZyme Rep_2546_c_59 Rep_2546_c_59_30 36059 37597 + GT5
CAZyme Rep_2546_c_59 Rep_2546_c_59_31 37623 40058 + GT35
CAZyme Rep_2546_c_59 Rep_2546_c_59_32 40066 41874 + GH13_39
Gene ID: Rep_2546_c_59_22
Type: CAZyme
Location: 23369 - 25843 (+)
Gene ID: Rep_2546_c_59_23
Type: TC
Location: 25800 - 27728 (+)
Gene ID: Rep_2546_c_59_24
Type: pfam
Location: 27749 - 28564 (+)
Gene ID: Rep_2546_c_59_25
Type: CAZyme
Location: 28569 - 30863 (+)
Gene ID: Rep_2546_c_59_26
Type: pfam
Location: 30876 - 31112 (+)
Gene ID: Rep_2546_c_59_27
Type: CAZyme
Location: 31766 - 33643 (+)
Gene ID: Rep_2546_c_59_28
Type: pfam
Location: 33708 - 34913 (+)
Gene ID: Rep_2546_c_59_29
Type: pfam
Location: 34916 - 36019 (+)
Gene ID: Rep_2546_c_59_30
Type: CAZyme
Location: 36059 - 37597 (+)
Gene ID: Rep_2546_c_59_31
Type: CAZyme
Location: 37623 - 40058 (+)
Gene ID: Rep_2546_c_59_32
Type: CAZyme
Location: 40066 - 41874 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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