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Cluster: Rep_2546_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2546_c_86 Rep_2546_c_86_26 33516 34496 + 3.A.1.1.4
TC Rep_2546_c_86 Rep_2546_c_86_27 34498 35403 + 3.A.1.1.11
NULL(UNKNOWN) Rep_2546_c_86 Rep_2546_c_86_28 35417 37327 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2546_c_86 Rep_2546_c_86_29 37351 41082 + Big_2 | Big_2
CAZyme Rep_2546_c_86 Rep_2546_c_86_30 41171 43699 + CBM67 | GH78
STP Rep_2546_c_86 Rep_2546_c_86_31 44292 45509 + Peripla_BP_2
TC Rep_2546_c_86 Rep_2546_c_86_32 45511 46539 + 3.A.1.13.2
TC Rep_2546_c_86 Rep_2546_c_86_33 46536 47765 + 3.A.1.13.2
Gene ID: Rep_2546_c_86_26
Type: TC
Location: 33516 - 34496 (+)
Gene ID: Rep_2546_c_86_27
Type: TC
Location: 34498 - 35403 (+)
Gene ID: Rep_2546_c_86_28
Type:
Location: 35417 - 37327 (+)
Gene ID: Rep_2546_c_86_29
Type: pfam
Location: 37351 - 41082 (+)
Gene ID: Rep_2546_c_86_30
Type: CAZyme
Location: 41171 - 43699 (+)
Gene ID: Rep_2546_c_86_31
Type: STP
Location: 44292 - 45509 (+)
Gene ID: Rep_2546_c_86_32
Type: TC
Location: 45511 - 46539 (+)
Gene ID: Rep_2546_c_86_33
Type: TC
Location: 46536 - 47765 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2546_c_86_32 vegetarian > vegan 1.48096 0.03161

🧭 Explore Read Mapping of CGC

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