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Cluster: Rep_253_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_253_c_5 Rep_253_c_5_16 21218 23167 + GH133
CAZyme Rep_253_c_5 Rep_253_c_5_17 23194 24450 + GT4
CAZyme Rep_253_c_5 Rep_253_c_5_18 24501 25880 + GH57
NULL(UNKNOWN) Rep_253_c_5 Rep_253_c_5_19 26009 26149 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_253_c_5 Rep_253_c_5_20 26164 26823 + Ribul_P_3_epim
CAZyme Rep_253_c_5 Rep_253_c_5_21 26864 29428 - GT51
pfam Rep_253_c_5 Rep_253_c_5_22 29817 30593 - Hexapep | Hexapep | Acetyltransf_11
TC Rep_253_c_5 Rep_253_c_5_23 30697 32088 - 1.B.17.3.5
TC Rep_253_c_5 Rep_253_c_5_24 32094 35420 - 2.A.6.2.22
TC Rep_253_c_5 Rep_253_c_5_25 35514 36716 - 2.A.6.2.46
Gene ID: Rep_253_c_5_16
Type: CAZyme
Location: 21218 - 23167 (+)
Gene ID: Rep_253_c_5_17
Type: CAZyme
Location: 23194 - 24450 (+)
Gene ID: Rep_253_c_5_18
Type: CAZyme
Location: 24501 - 25880 (+)
Gene ID: Rep_253_c_5_19
Type:
Location: 26009 - 26149 (+)
Gene ID: Rep_253_c_5_20
Type: pfam
Location: 26164 - 26823 (+)
Gene ID: Rep_253_c_5_21
Type: CAZyme
Location: 26864 - 29428 (-)
Gene ID: Rep_253_c_5_22
Type: pfam
Location: 29817 - 30593 (-)
Gene ID: Rep_253_c_5_23
Type: TC
Location: 30697 - 32088 (-)
Gene ID: Rep_253_c_5_24
Type: TC
Location: 32094 - 35420 (-)
Gene ID: Rep_253_c_5_25
Type: TC
Location: 35514 - 36716 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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