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Cluster: Rep_253_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_253_c_4 Rep_253_c_4_43 50428 52434 - GH127
pfam Rep_253_c_4 Rep_253_c_4_44 52475 54070 - SusD_RagB | SusD-like_2 | SusD-like_3
TC Rep_253_c_4 Rep_253_c_4_45 54126 57116 - 1.B.14.6.1
TF Rep_253_c_4 Rep_253_c_4_46 57278 60208 - HTH_AraC
NULL(UNKNOWN) Rep_253_c_4 Rep_253_c_4_47 60209 60349 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_253_c_4 Rep_253_c_4_48 60292 61560 - 3.D.5.1.1
TC Rep_253_c_4 Rep_253_c_4_49 61643 62269 - 3.D.5.1.1
TC Rep_253_c_4 Rep_253_c_4_50 62276 62905 - 3.D.5.1.1
pfam Rep_253_c_4 Rep_253_c_4_51 62983 63600 - FMN_bind
TC Rep_253_c_4 Rep_253_c_4_52 63613 64776 - 3.D.5.1.1
Gene ID: Rep_253_c_4_43
Type: CAZyme
Location: 50428 - 52434 (-)
Gene ID: Rep_253_c_4_44
Type: pfam
Location: 52475 - 54070 (-)
Gene ID: Rep_253_c_4_45
Type: TC
Location: 54126 - 57116 (-)
Gene ID: Rep_253_c_4_46
Type: TF
Location: 57278 - 60208 (-)
Gene ID: Rep_253_c_4_47
Type:
Location: 60209 - 60349 (+)
Gene ID: Rep_253_c_4_48
Type: TC
Location: 60292 - 61560 (-)
Gene ID: Rep_253_c_4_49
Type: TC
Location: 61643 - 62269 (-)
Gene ID: Rep_253_c_4_50
Type: TC
Location: 62276 - 62905 (-)
Gene ID: Rep_253_c_4_51
Type: pfam
Location: 62983 - 63600 (-)
Gene ID: Rep_253_c_4_52
Type: TC
Location: 63613 - 64776 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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