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Cluster: Rep_253_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_253_c_28 Rep_253_c_28_5 4442 7501 - 1.B.14.6.1
CAZyme Rep_253_c_28 Rep_253_c_28_6 8518 10344 + GH13_6
pfam Rep_253_c_28 Rep_253_c_28_7 10350 10643 + Glyco_hydro_53
pfam Rep_253_c_28 Rep_253_c_28_8 10769 11893 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC Rep_253_c_28 Rep_253_c_28_9 11919 13163 - 3.A.1.122.2
TC Rep_253_c_28 Rep_253_c_28_10 13181 14446 - 3.A.1.122.2
TC Rep_253_c_28 Rep_253_c_28_11 14443 15162 - 3.A.1.122.14
pfam Rep_253_c_28 Rep_253_c_28_12 15704 16174 - DUF4252
pfam Rep_253_c_28 Rep_253_c_28_13 16191 17114 - HHH_3 | HHH_3 | HHH_3
TC Rep_253_c_28 Rep_253_c_28_14 17121 18464 - 2.A.22.5.3
TC Rep_253_c_28 Rep_253_c_28_15 18743 20104 - 2.A.22.5.3
Gene ID: Rep_253_c_28_5
Type: TC
Location: 4442 - 7501 (-)
Gene ID: Rep_253_c_28_6
Type: CAZyme
Location: 8518 - 10344 (+)
Gene ID: Rep_253_c_28_7
Type: pfam
Location: 10350 - 10643 (+)
Gene ID: Rep_253_c_28_8
Type: pfam
Location: 10769 - 11893 (-)
Gene ID: Rep_253_c_28_9
Type: TC
Location: 11919 - 13163 (-)
Gene ID: Rep_253_c_28_10
Type: TC
Location: 13181 - 14446 (-)
Gene ID: Rep_253_c_28_11
Type: TC
Location: 14443 - 15162 (-)
Gene ID: Rep_253_c_28_12
Type: pfam
Location: 15704 - 16174 (-)
Gene ID: Rep_253_c_28_13
Type: pfam
Location: 16191 - 17114 (-)
Gene ID: Rep_253_c_28_14
Type: TC
Location: 17121 - 18464 (-)
Gene ID: Rep_253_c_28_15
Type: TC
Location: 18743 - 20104 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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