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Cluster: Rep_253_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_253_c_10 Rep_253_c_10_29 35043 38156 + 1.B.14.6.1
pfam Rep_253_c_10 Rep_253_c_10_30 38177 39907 + SusD_RagB | SusD-like_3
pfam Rep_253_c_10 Rep_253_c_10_31 39922 41337 + DUF4960
CAZyme Rep_253_c_10 Rep_253_c_10_32 41353 42945 + GH32
TF Rep_253_c_10 Rep_253_c_10_33 43021 44511 + HTH_AraC | HTH_AraC
TC Rep_253_c_10 Rep_253_c_10_34 44717 47791 + 1.B.14.6.1
pfam Rep_253_c_10 Rep_253_c_10_35 47824 49593 + SusD_RagB | SusD-like_3
CAZyme Rep_253_c_10 Rep_253_c_10_36 49743 51503 + GH32
Gene ID: Rep_253_c_10_29
Type: TC
Location: 35043 - 38156 (+)
Gene ID: Rep_253_c_10_30
Type: pfam
Location: 38177 - 39907 (+)
Gene ID: Rep_253_c_10_31
Type: pfam
Location: 39922 - 41337 (+)
Gene ID: Rep_253_c_10_32
Type: CAZyme
Location: 41353 - 42945 (+)
Gene ID: Rep_253_c_10_33
Type: TF
Location: 43021 - 44511 (+)
Gene ID: Rep_253_c_10_34
Type: TC
Location: 44717 - 47791 (+)
Gene ID: Rep_253_c_10_35
Type: pfam
Location: 47824 - 49593 (+)
Gene ID: Rep_253_c_10_36
Type: CAZyme
Location: 49743 - 51503 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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