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Cluster: Rep_252_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_12 Rep_252_c_12_25 23350 24933 + 3.D.4.3.2
pfam Rep_252_c_12 Rep_252_c_12_26 24972 26114 + Cyt_bd_oxida_II
CAZyme Rep_252_c_12 Rep_252_c_12_27 26147 27355 - GT19
pfam Rep_252_c_12 Rep_252_c_12_28 27340 28107 - SurE
TC Rep_252_c_12 Rep_252_c_12_29 28264 29028 + 8.A.3.2.3
pfam Rep_252_c_12 Rep_252_c_12_30 29041 29952 + ParBc | HTH_ParB | ParB_dimer
pfam Rep_252_c_12 Rep_252_c_12_31 29977 30708 + DUF5683
CAZyme Rep_252_c_12 Rep_252_c_12_32 30759 32213 + GH23
Gene ID: Rep_252_c_12_25
Type: TC
Location: 23350 - 24933 (+)
Gene ID: Rep_252_c_12_26
Type: pfam
Location: 24972 - 26114 (+)
Gene ID: Rep_252_c_12_27
Type: CAZyme
Location: 26147 - 27355 (-)
Gene ID: Rep_252_c_12_28
Type: pfam
Location: 27340 - 28107 (-)
Gene ID: Rep_252_c_12_29
Type: TC
Location: 28264 - 29028 (+)
Gene ID: Rep_252_c_12_30
Type: pfam
Location: 29041 - 29952 (+)
Gene ID: Rep_252_c_12_31
Type: pfam
Location: 29977 - 30708 (+)
Gene ID: Rep_252_c_12_32
Type: CAZyme
Location: 30759 - 32213 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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