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Cluster: Rep_252_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_182 Rep_252_c_182_22 24895 28071 - 1.B.14.6.1
TF Rep_252_c_182 Rep_252_c_182_23 28194 32171 - HTH_AraC | HTH_AraC
pfam Rep_252_c_182 Rep_252_c_182_24 32313 32642 - DUF3467
CAZyme Rep_252_c_182 Rep_252_c_182_25 33120 35123 + GH182
CAZyme Rep_252_c_182 Rep_252_c_182_26 35163 37235 + GH43_3
CAZyme Rep_252_c_182 Rep_252_c_182_27 37419 39839 + GH3
CAZyme Rep_252_c_182 Rep_252_c_182_28 39879 40913 + GH43_3
TC Rep_252_c_182 Rep_252_c_182_29 40916 44005 + 1.B.14.6.2
Gene ID: Rep_252_c_182_22
Type: TC
Location: 24895 - 28071 (-)
Gene ID: Rep_252_c_182_23
Type: TF
Location: 28194 - 32171 (-)
Gene ID: Rep_252_c_182_24
Type: pfam
Location: 32313 - 32642 (-)
Gene ID: Rep_252_c_182_25
Type: CAZyme
Location: 33120 - 35123 (+)
Gene ID: Rep_252_c_182_26
Type: CAZyme
Location: 35163 - 37235 (+)
Gene ID: Rep_252_c_182_27
Type: CAZyme
Location: 37419 - 39839 (+)
Gene ID: Rep_252_c_182_28
Type: CAZyme
Location: 39879 - 40913 (+)
Gene ID: Rep_252_c_182_29
Type: TC
Location: 40916 - 44005 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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