Cluster: Rep_252_CGC52
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_252
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_252_c_178 | Rep_252_c_178_1 | 2 | 1219 | - | GH95 |
| CAZyme | Rep_252_c_178 | Rep_252_c_178_2 | 1236 | 2579 | - | CE19 |
| NULL(UNKNOWN) | Rep_252_c_178 | Rep_252_c_178_3 | 2613 | 3125 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_252_c_178 | Rep_252_c_178_4 | 3135 | 7283 | - | GH142 | GH143 | GH43_18 |
| pfam | Rep_252_c_178 | Rep_252_c_178_5 | 7327 | 9570 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_252_c_178 | Rep_252_c_178_6 | 9612 | 12956 | - | 1.B.14.6.1 |
| pfam | Rep_252_c_178 | Rep_252_c_178_7 | 12987 | 14426 | - | DUF4957 | DUF4992 | DUF5123 |
| pfam | Rep_252_c_178 | Rep_252_c_178_8 | 14445 | 15287 | - | AP_endonuc_2 |
| CAZyme | Rep_252_c_178 | Rep_252_c_178_9 | 15226 | 18021 | - | PL1_2 |
| pfam | Rep_252_c_178 | Rep_252_c_178_10 | 18033 | 18419 | - | Bgal_small_N |
| NULL(UNKNOWN) | Rep_252_c_178 | Rep_252_c_178_11 | 18481 | 18714 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_252_c_178 | Rep_252_c_178_12 | 18711 | 22577 | - | CBM57 | CBM97 | GH137 | GH2 |
Gene ID: Rep_252_c_178_1
Type: CAZyme
Location: 2 - 1219 (-)
Type: CAZyme
Location: 2 - 1219 (-)
Gene ID: Rep_252_c_178_2
Type: CAZyme
Location: 1236 - 2579 (-)
Type: CAZyme
Location: 1236 - 2579 (-)
Gene ID: Rep_252_c_178_3
Type:
Location: 2613 - 3125 (-)
Type:
Location: 2613 - 3125 (-)
Gene ID: Rep_252_c_178_4
Type: CAZyme
Location: 3135 - 7283 (-)
Type: CAZyme
Location: 3135 - 7283 (-)
Gene ID: Rep_252_c_178_5
Type: pfam
Location: 7327 - 9570 (-)
Type: pfam
Location: 7327 - 9570 (-)
Gene ID: Rep_252_c_178_6
Type: TC
Location: 9612 - 12956 (-)
Type: TC
Location: 9612 - 12956 (-)
Gene ID: Rep_252_c_178_7
Type: pfam
Location: 12987 - 14426 (-)
Type: pfam
Location: 12987 - 14426 (-)
Gene ID: Rep_252_c_178_8
Type: pfam
Location: 14445 - 15287 (-)
Type: pfam
Location: 14445 - 15287 (-)
Gene ID: Rep_252_c_178_9
Type: CAZyme
Location: 15226 - 18021 (-)
Type: CAZyme
Location: 15226 - 18021 (-)
Gene ID: Rep_252_c_178_10
Type: pfam
Location: 18033 - 18419 (-)
Type: pfam
Location: 18033 - 18419 (-)
Gene ID: Rep_252_c_178_11
Type:
Location: 18481 - 18714 (-)
Type:
Location: 18481 - 18714 (-)
Gene ID: Rep_252_c_178_12
Type: CAZyme
Location: 18711 - 22577 (-)
Type: CAZyme
Location: 18711 - 22577 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp938023885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.