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Cluster: Rep_252_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_170 Rep_252_c_170_2 656 2200 - 3.D.1.2.1
TC Rep_252_c_170 Rep_252_c_170_3 2252 3757 - 3.D.1.5.1
TC Rep_252_c_170 Rep_252_c_170_4 3783 5747 - 3.D.9.1.1
TC Rep_252_c_170 Rep_252_c_170_5 5755 6063 - 3.D.1.2.1
pfam Rep_252_c_170 Rep_252_c_170_6 6060 6581 - Oxidored_q3
STP Rep_252_c_170 Rep_252_c_170_7 6588 7151 - Fer4 | Fer4
TC Rep_252_c_170 Rep_252_c_170_8 7189 8274 - 3.D.1.5.1
TC Rep_252_c_170 Rep_252_c_170_9 8306 9880 - 3.D.1.5.1
TC Rep_252_c_170 Rep_252_c_170_10 9890 10726 - 3.D.1.6.1
TC Rep_252_c_170 Rep_252_c_170_11 10717 11067 - 3.D.1.8.1
CAZyme Rep_252_c_170 Rep_252_c_170_12 11260 13722 - GH2
Gene ID: Rep_252_c_170_2
Type: TC
Location: 656 - 2200 (-)
Gene ID: Rep_252_c_170_3
Type: TC
Location: 2252 - 3757 (-)
Gene ID: Rep_252_c_170_4
Type: TC
Location: 3783 - 5747 (-)
Gene ID: Rep_252_c_170_5
Type: TC
Location: 5755 - 6063 (-)
Gene ID: Rep_252_c_170_6
Type: pfam
Location: 6060 - 6581 (-)
Gene ID: Rep_252_c_170_7
Type: STP
Location: 6588 - 7151 (-)
Gene ID: Rep_252_c_170_8
Type: TC
Location: 7189 - 8274 (-)
Gene ID: Rep_252_c_170_9
Type: TC
Location: 8306 - 9880 (-)
Gene ID: Rep_252_c_170_10
Type: TC
Location: 9890 - 10726 (-)
Gene ID: Rep_252_c_170_11
Type: TC
Location: 10717 - 11067 (-)
Gene ID: Rep_252_c_170_12
Type: CAZyme
Location: 11260 - 13722 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_252_c_170_11 vegan > omnivore 1.05741 0.04449

🧭 Explore Read Mapping of CGC

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