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Cluster: Rep_252_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_252_c_151 Rep_252_c_151_5 2244 4127 - GH67
CAZyme Rep_252_c_151 Rep_252_c_151_6 4139 5281 - GH8
pfam Rep_252_c_151 Rep_252_c_151_7 5459 7339 - SusD_RagB | SusD-like_3
TC Rep_252_c_151 Rep_252_c_151_8 7363 9831 - 1.B.14.6.1
TC Rep_252_c_151 Rep_252_c_151_9 9853 10599 - 1.B.14.6.1
CAZyme Rep_252_c_151 Rep_252_c_151_10 10843 13443 - GH3
TF Rep_252_c_151 Rep_252_c_151_11 13656 17555 - HTH_AraC | HTH_AraC
TC Rep_252_c_151 Rep_252_c_151_12 17753 19159 + 2.A.2.3.2
TC Rep_252_c_151 Rep_252_c_151_13 19221 22349 + 1.B.14.6.1
Gene ID: Rep_252_c_151_5
Type: CAZyme
Location: 2244 - 4127 (-)
Gene ID: Rep_252_c_151_6
Type: CAZyme
Location: 4139 - 5281 (-)
Gene ID: Rep_252_c_151_7
Type: pfam
Location: 5459 - 7339 (-)
Gene ID: Rep_252_c_151_8
Type: TC
Location: 7363 - 9831 (-)
Gene ID: Rep_252_c_151_9
Type: TC
Location: 9853 - 10599 (-)
Gene ID: Rep_252_c_151_10
Type: CAZyme
Location: 10843 - 13443 (-)
Gene ID: Rep_252_c_151_11
Type: TF
Location: 13656 - 17555 (-)
Gene ID: Rep_252_c_151_12
Type: TC
Location: 17753 - 19159 (+)
Gene ID: Rep_252_c_151_13
Type: TC
Location: 19221 - 22349 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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