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Cluster: Rep_252_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_121 Rep_252_c_121_9 8146 9000 - 1.A.30.1.4
NULL(UNKNOWN) Rep_252_c_121 Rep_252_c_121_10 9178 9306 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase Rep_252_c_121 Rep_252_c_121_11 9400 13251 + C56.972
TC Rep_252_c_121 Rep_252_c_121_12 13254 13805 + 2.A.51.1.5
TC Rep_252_c_121 Rep_252_c_121_13 13832 14407 + 2.A.51.1.6
CAZyme Rep_252_c_121 Rep_252_c_121_14 14664 16502 + GH13_46
CAZyme Rep_252_c_121 Rep_252_c_121_15 16502 17428 + GT2
pfam Rep_252_c_121 Rep_252_c_121_16 17425 18672 - ABC2_membrane_2 | ABC2_membrane_3
TC Rep_252_c_121 Rep_252_c_121_17 18669 19679 - 3.A.1.115.1
CAZyme Rep_252_c_121 Rep_252_c_121_18 19742 21790 - GH13_14
CAZyme Rep_252_c_121 Rep_252_c_121_19 21893 24028 - GH97
CAZyme Rep_252_c_121 Rep_252_c_121_20 24067 26751 - GH77
TC Rep_252_c_121 Rep_252_c_121_21 27000 28793 - 3.A.1.106.2
Gene ID: Rep_252_c_121_9
Type: TC
Location: 8146 - 9000 (-)
Gene ID: Rep_252_c_121_10
Type:
Location: 9178 - 9306 (-)
Gene ID: Rep_252_c_121_11
Type: peptidase
Location: 9400 - 13251 (+)
Gene ID: Rep_252_c_121_12
Type: TC
Location: 13254 - 13805 (+)
Gene ID: Rep_252_c_121_13
Type: TC
Location: 13832 - 14407 (+)
Gene ID: Rep_252_c_121_14
Type: CAZyme
Location: 14664 - 16502 (+)
Gene ID: Rep_252_c_121_15
Type: CAZyme
Location: 16502 - 17428 (+)
Gene ID: Rep_252_c_121_16
Type: pfam
Location: 17425 - 18672 (-)
Gene ID: Rep_252_c_121_17
Type: TC
Location: 18669 - 19679 (-)
Gene ID: Rep_252_c_121_18
Type: CAZyme
Location: 19742 - 21790 (-)
Gene ID: Rep_252_c_121_19
Type: CAZyme
Location: 21893 - 24028 (-)
Gene ID: Rep_252_c_121_20
Type: CAZyme
Location: 24067 - 26751 (-)
Gene ID: Rep_252_c_121_21
Type: TC
Location: 27000 - 28793 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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