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Cluster: Rep_252_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_252_c_5 Rep_252_c_5_1 3 575 - GH3
TC Rep_252_c_5 Rep_252_c_5_2 814 3504 + 1.B.14.6.2
TC Rep_252_c_5 Rep_252_c_5_3 3557 5245 + 8.A.46.1.1
CAZyme Rep_252_c_5 Rep_252_c_5_4 5363 6343 - GH43_17
pfam Rep_252_c_5 Rep_252_c_5_5 6456 7829 - F5_F8_type_C | BT_3987-like_N
pfam Rep_252_c_5 Rep_252_c_5_6 7850 9865 - SusD_RagB | SusD-like_3
TC Rep_252_c_5 Rep_252_c_5_7 9905 13303 - 1.B.14.6.1
STP Rep_252_c_5 Rep_252_c_5_8 13350 14309 - FecR
CAZyme Rep_252_c_5 Rep_252_c_5_9 14342 15958 - GH27
Gene ID: Rep_252_c_5_1
Type: CAZyme
Location: 3 - 575 (-)
Gene ID: Rep_252_c_5_2
Type: TC
Location: 814 - 3504 (+)
Gene ID: Rep_252_c_5_3
Type: TC
Location: 3557 - 5245 (+)
Gene ID: Rep_252_c_5_4
Type: CAZyme
Location: 5363 - 6343 (-)
Gene ID: Rep_252_c_5_5
Type: pfam
Location: 6456 - 7829 (-)
Gene ID: Rep_252_c_5_6
Type: pfam
Location: 7850 - 9865 (-)
Gene ID: Rep_252_c_5_7
Type: TC
Location: 9905 - 13303 (-)
Gene ID: Rep_252_c_5_8
Type: STP
Location: 13350 - 14309 (-)
Gene ID: Rep_252_c_5_9
Type: CAZyme
Location: 14342 - 15958 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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