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Cluster: Rep_252_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_108 Rep_252_c_108_6 9691 12714 - 1.B.14.6.1
CAZyme Rep_252_c_108 Rep_252_c_108_7 12843 15674 - GH146
NULL(UNKNOWN) Rep_252_c_108 Rep_252_c_108_8 16034 16471 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase Rep_252_c_108 Rep_252_c_108_9 16600 18177 - M43.UPA
CAZyme Rep_252_c_108 Rep_252_c_108_10 18208 23232 - GH2 | GH63
TC Rep_252_c_108 Rep_252_c_108_11 23247 23849 - 2.A.124.1.2
pfam Rep_252_c_108 Rep_252_c_108_12 23846 24136 - Lys_export
TC Rep_252_c_108 Rep_252_c_108_13 24189 25727 - 8.A.46.1.3
NULL(UNKNOWN) Rep_252_c_108 Rep_252_c_108_14 25761 26597 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_252_c_108 Rep_252_c_108_15 26536 28116 - 1.B.14.6.1
TC Rep_252_c_108 Rep_252_c_108_16 28117 29169 - 1.B.14.6.1
Gene ID: Rep_252_c_108_6
Type: TC
Location: 9691 - 12714 (-)
Gene ID: Rep_252_c_108_7
Type: CAZyme
Location: 12843 - 15674 (-)
Gene ID: Rep_252_c_108_8
Type:
Location: 16034 - 16471 (-)
Gene ID: Rep_252_c_108_9
Type: peptidase
Location: 16600 - 18177 (-)
Gene ID: Rep_252_c_108_10
Type: CAZyme
Location: 18208 - 23232 (-)
Gene ID: Rep_252_c_108_11
Type: TC
Location: 23247 - 23849 (-)
Gene ID: Rep_252_c_108_12
Type: pfam
Location: 23846 - 24136 (-)
Gene ID: Rep_252_c_108_13
Type: TC
Location: 24189 - 25727 (-)
Gene ID: Rep_252_c_108_14
Type:
Location: 25761 - 26597 (-)
Gene ID: Rep_252_c_108_15
Type: TC
Location: 26536 - 28116 (-)
Gene ID: Rep_252_c_108_16
Type: TC
Location: 28117 - 29169 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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