dbCAN Logo

Cluster: Rep_252_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_93 Rep_252_c_93_1 341 3202 + 1.B.42.1.8
TC Rep_252_c_93 Rep_252_c_93_2 3218 5122 - 3.A.25.2.1
pfam Rep_252_c_93 Rep_252_c_93_3 5292 6389 - Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme Rep_252_c_93 Rep_252_c_93_4 6479 8677 - GH89
CAZyme Rep_252_c_93 Rep_252_c_93_5 8699 10744 - GH127
CAZyme Rep_252_c_93 Rep_252_c_93_6 10774 13293 - GH31_15
TC Rep_252_c_93 Rep_252_c_93_7 13459 15042 - 8.A.46.2.1
TC Rep_252_c_93 Rep_252_c_93_8 15057 18233 - 1.B.14.6.2
pfam Rep_252_c_93 Rep_252_c_93_9 18387 19820 - DUF5009
TC Rep_252_c_93 Rep_252_c_93_10 19837 21234 - 2.A.1.1.55
pfam Rep_252_c_93 Rep_252_c_93_11 21253 22350 - DUF4434
TC Rep_252_c_93 Rep_252_c_93_12 22659 23462 + 1.B.14.6.1
Gene ID: Rep_252_c_93_1
Type: TC
Location: 341 - 3202 (+)
Gene ID: Rep_252_c_93_2
Type: TC
Location: 3218 - 5122 (-)
Gene ID: Rep_252_c_93_3
Type: pfam
Location: 5292 - 6389 (-)
Gene ID: Rep_252_c_93_4
Type: CAZyme
Location: 6479 - 8677 (-)
Gene ID: Rep_252_c_93_5
Type: CAZyme
Location: 8699 - 10744 (-)
Gene ID: Rep_252_c_93_6
Type: CAZyme
Location: 10774 - 13293 (-)
Gene ID: Rep_252_c_93_7
Type: TC
Location: 13459 - 15042 (-)
Gene ID: Rep_252_c_93_8
Type: TC
Location: 15057 - 18233 (-)
Gene ID: Rep_252_c_93_9
Type: pfam
Location: 18387 - 19820 (-)
Gene ID: Rep_252_c_93_10
Type: TC
Location: 19837 - 21234 (-)
Gene ID: Rep_252_c_93_11
Type: pfam
Location: 21253 - 22350 (-)
Gene ID: Rep_252_c_93_12
Type: TC
Location: 22659 - 23462 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List