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Cluster: Rep_252_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_88 Rep_252_c_88_2 140 1879 + 8.A.46.1.3
pfam Rep_252_c_88 Rep_252_c_88_3 1915 2946 + DUF5017
CAZyme Rep_252_c_88 Rep_252_c_88_4 2960 5986 + PL8_2
CAZyme Rep_252_c_88 Rep_252_c_88_5 6022 7227 + GH88
sulfatase Rep_252_c_88 Rep_252_c_88_6 7285 8802 + S1_27
TF Rep_252_c_88 Rep_252_c_88_7 8815 12816 - HTH_AraC
CAZyme Rep_252_c_88 Rep_252_c_88_8 12950 14863 - PL33_1
CAZyme Rep_252_c_88 Rep_252_c_88_9 14879 17350 - GH3
TC Rep_252_c_88 Rep_252_c_88_10 17654 20818 + 1.B.14.6.1
TC Rep_252_c_88 Rep_252_c_88_11 20832 22532 + 8.A.46.1.3
Gene ID: Rep_252_c_88_2
Type: TC
Location: 140 - 1879 (+)
Gene ID: Rep_252_c_88_3
Type: pfam
Location: 1915 - 2946 (+)
Gene ID: Rep_252_c_88_4
Type: CAZyme
Location: 2960 - 5986 (+)
Gene ID: Rep_252_c_88_5
Type: CAZyme
Location: 6022 - 7227 (+)
Gene ID: Rep_252_c_88_6
Type: sulfatase
Location: 7285 - 8802 (+)
Gene ID: Rep_252_c_88_7
Type: TF
Location: 8815 - 12816 (-)
Gene ID: Rep_252_c_88_8
Type: CAZyme
Location: 12950 - 14863 (-)
Gene ID: Rep_252_c_88_9
Type: CAZyme
Location: 14879 - 17350 (-)
Gene ID: Rep_252_c_88_10
Type: TC
Location: 17654 - 20818 (+)
Gene ID: Rep_252_c_88_11
Type: TC
Location: 20832 - 22532 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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