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Cluster: Rep_252_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_81 Rep_252_c_81_31 28925 29971 + 2.A.19.5.2
NULL(UNKNOWN) Rep_252_c_81 Rep_252_c_81_32 29961 31061 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_252_c_81 Rep_252_c_81_33 31064 32014 - GT2
CAZyme Rep_252_c_81 Rep_252_c_81_34 32086 34515 - GH92
pfam Rep_252_c_81 Rep_252_c_81_35 34574 36241 - SusD_RagB | SusD-like_3
TC Rep_252_c_81 Rep_252_c_81_36 36254 39244 - 1.B.14.6.1
CAZyme Rep_252_c_81 Rep_252_c_81_37 39286 40644 - GH28
CAZyme Rep_252_c_81 Rep_252_c_81_38 40832 43471 - GH78
Gene ID: Rep_252_c_81_31
Type: TC
Location: 28925 - 29971 (+)
Gene ID: Rep_252_c_81_32
Type:
Location: 29961 - 31061 (-)
Gene ID: Rep_252_c_81_33
Type: CAZyme
Location: 31064 - 32014 (-)
Gene ID: Rep_252_c_81_34
Type: CAZyme
Location: 32086 - 34515 (-)
Gene ID: Rep_252_c_81_35
Type: pfam
Location: 34574 - 36241 (-)
Gene ID: Rep_252_c_81_36
Type: TC
Location: 36254 - 39244 (-)
Gene ID: Rep_252_c_81_37
Type: CAZyme
Location: 39286 - 40644 (-)
Gene ID: Rep_252_c_81_38
Type: CAZyme
Location: 40832 - 43471 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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