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Cluster: Rep_252_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_2 Rep_252_c_2_4 2132 3574 + 9.A.25.1.1
pfam Rep_252_c_2 Rep_252_c_2_5 3605 4369 + GldL_N
TC Rep_252_c_2 Rep_252_c_2_6 4398 5954 + 9.A.25.1.1
pfam Rep_252_c_2 Rep_252_c_2_7 5987 7045 + GldN
pfam Rep_252_c_2 Rep_252_c_2_8 7101 7733 + OMP_b-brl | OMP_b-brl_2
CAZyme Rep_252_c_2 Rep_252_c_2_9 7933 9804 - GH32
NULL(UNKNOWN) Rep_252_c_2 Rep_252_c_2_10 9826 12132 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_252_c_2 Rep_252_c_2_11 12385 14055 + DUF6377
TC Rep_252_c_2 Rep_252_c_2_12 14110 16362 + 3.A.11.3.1
Gene ID: Rep_252_c_2_4
Type: TC
Location: 2132 - 3574 (+)
Gene ID: Rep_252_c_2_5
Type: pfam
Location: 3605 - 4369 (+)
Gene ID: Rep_252_c_2_6
Type: TC
Location: 4398 - 5954 (+)
Gene ID: Rep_252_c_2_7
Type: pfam
Location: 5987 - 7045 (+)
Gene ID: Rep_252_c_2_8
Type: pfam
Location: 7101 - 7733 (+)
Gene ID: Rep_252_c_2_9
Type: CAZyme
Location: 7933 - 9804 (-)
Gene ID: Rep_252_c_2_10
Type:
Location: 9826 - 12132 (-)
Gene ID: Rep_252_c_2_11
Type: pfam
Location: 12385 - 14055 (+)
Gene ID: Rep_252_c_2_12
Type: TC
Location: 14110 - 16362 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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