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Cluster: Rep_252_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_79 Rep_252_c_79_7 7159 10221 - 1.B.14.6.1
CAZyme Rep_252_c_79 Rep_252_c_79_8 10665 12491 + GH13_6
NULL(UNKNOWN) Rep_252_c_79 Rep_252_c_79_9 12810 12992 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_252_c_79 Rep_252_c_79_10 12916 14040 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC Rep_252_c_79 Rep_252_c_79_11 14066 15310 - 3.A.1.122.2
TC Rep_252_c_79 Rep_252_c_79_12 15328 16593 - 3.A.1.122.2
TC Rep_252_c_79 Rep_252_c_79_13 16590 17309 - 3.A.1.122.14
pfam Rep_252_c_79 Rep_252_c_79_14 17860 18330 - DUF4252
pfam Rep_252_c_79 Rep_252_c_79_15 18352 19284 - HHH_3 | HHH_3 | HHH_3
TC Rep_252_c_79 Rep_252_c_79_16 19304 20647 - 2.A.22.5.3
TC Rep_252_c_79 Rep_252_c_79_17 20843 22201 - 2.A.22.5.3
Gene ID: Rep_252_c_79_7
Type: TC
Location: 7159 - 10221 (-)
Gene ID: Rep_252_c_79_8
Type: CAZyme
Location: 10665 - 12491 (+)
Gene ID: Rep_252_c_79_9
Type:
Location: 12810 - 12992 (+)
Gene ID: Rep_252_c_79_10
Type: pfam
Location: 12916 - 14040 (-)
Gene ID: Rep_252_c_79_11
Type: TC
Location: 14066 - 15310 (-)
Gene ID: Rep_252_c_79_12
Type: TC
Location: 15328 - 16593 (-)
Gene ID: Rep_252_c_79_13
Type: TC
Location: 16590 - 17309 (-)
Gene ID: Rep_252_c_79_14
Type: pfam
Location: 17860 - 18330 (-)
Gene ID: Rep_252_c_79_15
Type: pfam
Location: 18352 - 19284 (-)
Gene ID: Rep_252_c_79_16
Type: TC
Location: 19304 - 20647 (-)
Gene ID: Rep_252_c_79_17
Type: TC
Location: 20843 - 22201 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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