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Cluster: Rep_252_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_252_c_35 Rep_252_c_35_2 633 3911 + 1.B.14.6.1
TC Rep_252_c_35 Rep_252_c_35_3 3966 5990 + 8.A.46.1.1
pfam Rep_252_c_35 Rep_252_c_35_4 6112 7425 + TIG
TC Rep_252_c_35 Rep_252_c_35_5 7465 10527 + 1.B.14.6.1
pfam Rep_252_c_35 Rep_252_c_35_6 10539 12506 + SusD_RagB | SusD-like_3
pfam Rep_252_c_35 Rep_252_c_35_7 12553 13437 + BT_3987-like_N | BT_3044-like_C | DUF4973
CAZyme Rep_252_c_35 Rep_252_c_35_8 13856 14974 + GH43_24
pfam Rep_252_c_35 Rep_252_c_35_9 15177 18530 + TMEM260-like
CAZyme Rep_252_c_35 Rep_252_c_35_10 18570 19160 + CE4
Gene ID: Rep_252_c_35_2
Type: TC
Location: 633 - 3911 (+)
Gene ID: Rep_252_c_35_3
Type: TC
Location: 3966 - 5990 (+)
Gene ID: Rep_252_c_35_4
Type: pfam
Location: 6112 - 7425 (+)
Gene ID: Rep_252_c_35_5
Type: TC
Location: 7465 - 10527 (+)
Gene ID: Rep_252_c_35_6
Type: pfam
Location: 10539 - 12506 (+)
Gene ID: Rep_252_c_35_7
Type: pfam
Location: 12553 - 13437 (+)
Gene ID: Rep_252_c_35_8
Type: CAZyme
Location: 13856 - 14974 (+)
Gene ID: Rep_252_c_35_9
Type: pfam
Location: 15177 - 18530 (+)
Gene ID: Rep_252_c_35_10
Type: CAZyme
Location: 18570 - 19160 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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