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Cluster: Rep_2523_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2523_c_92 Rep_2523_c_92_12 18426 19430 + 3.A.1.1.10
TC Rep_2523_c_92 Rep_2523_c_92_13 19443 20381 + 3.A.1.1.29
pfam Rep_2523_c_92 Rep_2523_c_92_14 20386 21897 + DUF4127
CAZyme Rep_2523_c_92 Rep_2523_c_92_15 21894 23870 + GH31_7
NULL(UNKNOWN) Rep_2523_c_92 Rep_2523_c_92_16 23881 24483 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2523_c_92 Rep_2523_c_92_17 24499 26256 + GDPD
CAZyme Rep_2523_c_92 Rep_2523_c_92_18 26277 28241 + GH26
pfam Rep_2523_c_92 Rep_2523_c_92_19 28330 29049 + NanE
CAZyme Rep_2523_c_92 Rep_2523_c_92_20 29193 31364 + GH36
Gene ID: Rep_2523_c_92_12
Type: TC
Location: 18426 - 19430 (+)
Gene ID: Rep_2523_c_92_13
Type: TC
Location: 19443 - 20381 (+)
Gene ID: Rep_2523_c_92_14
Type: pfam
Location: 20386 - 21897 (+)
Gene ID: Rep_2523_c_92_15
Type: CAZyme
Location: 21894 - 23870 (+)
Gene ID: Rep_2523_c_92_16
Type:
Location: 23881 - 24483 (+)
Gene ID: Rep_2523_c_92_17
Type: pfam
Location: 24499 - 26256 (+)
Gene ID: Rep_2523_c_92_18
Type: CAZyme
Location: 26277 - 28241 (+)
Gene ID: Rep_2523_c_92_19
Type: pfam
Location: 28330 - 29049 (+)
Gene ID: Rep_2523_c_92_20
Type: CAZyme
Location: 29193 - 31364 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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