Cluster: Rep_251_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: pectin
- Genome ID: Rep_251
- CGC Family ID: CGCFAM_00108
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_251_c_60 | Rep_251_c_60_6 | 6203 | 7936 | - | 2.A.21.3.19 |
| sulfatase | Rep_251_c_60 | Rep_251_c_60_7 | 8035 | 9219 | - | S1_22 |
| CAZyme | Rep_251_c_60 | Rep_251_c_60_8 | 9731 | 10747 | - | GH43_5 |
| CAZyme | Rep_251_c_60 | Rep_251_c_60_9 | 10854 | 12698 | - | GH43_4 |
| pfam | Rep_251_c_60 | Rep_251_c_60_10 | 12816 | 14639 | - | Big_3 |
| pfam | Rep_251_c_60 | Rep_251_c_60_11 | 14691 | 16448 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_251_c_60 | Rep_251_c_60_12 | 16506 | 19703 | - | 1.B.14.6.1 |
Gene ID: Rep_251_c_60_6
Type: TC
Location: 6203 - 7936 (-)
Type: TC
Location: 6203 - 7936 (-)
Gene ID: Rep_251_c_60_7
Type: sulfatase
Location: 8035 - 9219 (-)
Type: sulfatase
Location: 8035 - 9219 (-)
Gene ID: Rep_251_c_60_8
Type: CAZyme
Location: 9731 - 10747 (-)
Type: CAZyme
Location: 9731 - 10747 (-)
Gene ID: Rep_251_c_60_9
Type: CAZyme
Location: 10854 - 12698 (-)
Type: CAZyme
Location: 10854 - 12698 (-)
Gene ID: Rep_251_c_60_10
Type: pfam
Location: 12816 - 14639 (-)
Type: pfam
Location: 12816 - 14639 (-)
Gene ID: Rep_251_c_60_11
Type: pfam
Location: 14691 - 16448 (-)
Type: pfam
Location: 14691 - 16448 (-)
Gene ID: Rep_251_c_60_12
Type: TC
Location: 16506 - 19703 (-)
Type: TC
Location: 16506 - 19703 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900322095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.