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Cluster: Rep_251_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_251_c_113 Rep_251_c_113_10 13225 14385 + 3.D.5.1.1
pfam Rep_251_c_113 Rep_251_c_113_11 14400 15113 + FMN_bind
TC Rep_251_c_113 Rep_251_c_113_12 15116 15742 + 3.D.5.1.1
TC Rep_251_c_113 Rep_251_c_113_13 15745 16371 + 3.D.5.1.1
TC Rep_251_c_113 Rep_251_c_113_14 16390 17661 + 3.D.5.1.1
NULL(UNKNOWN) Rep_251_c_113 Rep_251_c_113_15 17737 18252 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_251_c_113 Rep_251_c_113_16 18385 20049 + GT3
CAZyme Rep_251_c_113 Rep_251_c_113_17 20129 22690 + GT35
Gene ID: Rep_251_c_113_10
Type: TC
Location: 13225 - 14385 (+)
Gene ID: Rep_251_c_113_11
Type: pfam
Location: 14400 - 15113 (+)
Gene ID: Rep_251_c_113_12
Type: TC
Location: 15116 - 15742 (+)
Gene ID: Rep_251_c_113_13
Type: TC
Location: 15745 - 16371 (+)
Gene ID: Rep_251_c_113_14
Type: TC
Location: 16390 - 17661 (+)
Gene ID: Rep_251_c_113_15
Type:
Location: 17737 - 18252 (-)
Gene ID: Rep_251_c_113_16
Type: CAZyme
Location: 18385 - 20049 (+)
Gene ID: Rep_251_c_113_17
Type: CAZyme
Location: 20129 - 22690 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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