Cluster: Rep_2519_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2519
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2519_c_6 | Rep_2519_c_6_26 | 24576 | 26918 | - | GH2 |
| TF | Rep_2519_c_6 | Rep_2519_c_6_27 | 27078 | 27908 | + | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | Rep_2519_c_6 | Rep_2519_c_6_28 | 28018 | 28545 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2519_c_6 | Rep_2519_c_6_29 | 28741 | 29838 | + | 3.B.1.1.5 |
| NULL(UNKNOWN) | Rep_2519_c_6 | Rep_2519_c_6_30 | 29851 | 29979 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2519_c_6 | Rep_2519_c_6_31 | 30003 | 30893 | + | 2.A.115.1.1 |
| pfam | Rep_2519_c_6 | Rep_2519_c_6_32 | 30951 | 32165 | - | MFS_1 |
| TF | Rep_2519_c_6 | Rep_2519_c_6_33 | 32183 | 32977 | - | HTH_DeoR |
| CAZyme | Rep_2519_c_6 | Rep_2519_c_6_34 | 33082 | 35802 | - | GH106 |
| pfam | Rep_2519_c_6 | Rep_2519_c_6_35 | 35814 | 36623 | - | Amidohydro_2 |
| CAZyme | Rep_2519_c_6 | Rep_2519_c_6_36 | 36694 | 37692 | + | GT2 |
| STP | Rep_2519_c_6 | Rep_2519_c_6_37 | 37743 | 38303 | - | Pribosyltran |
| TC | Rep_2519_c_6 | Rep_2519_c_6_38 | 38358 | 39713 | - | 2.A.40.7.6 |
Gene ID: Rep_2519_c_6_26
Type: CAZyme
Location: 24576 - 26918 (-)
Type: CAZyme
Location: 24576 - 26918 (-)
Gene ID: Rep_2519_c_6_27
Type: TF
Location: 27078 - 27908 (+)
Type: TF
Location: 27078 - 27908 (+)
Gene ID: Rep_2519_c_6_28
Type:
Location: 28018 - 28545 (-)
Type:
Location: 28018 - 28545 (-)
Gene ID: Rep_2519_c_6_29
Type: TC
Location: 28741 - 29838 (+)
Type: TC
Location: 28741 - 29838 (+)
Gene ID: Rep_2519_c_6_30
Type:
Location: 29851 - 29979 (+)
Type:
Location: 29851 - 29979 (+)
Gene ID: Rep_2519_c_6_31
Type: TC
Location: 30003 - 30893 (+)
Type: TC
Location: 30003 - 30893 (+)
Gene ID: Rep_2519_c_6_32
Type: pfam
Location: 30951 - 32165 (-)
Type: pfam
Location: 30951 - 32165 (-)
Gene ID: Rep_2519_c_6_33
Type: TF
Location: 32183 - 32977 (-)
Type: TF
Location: 32183 - 32977 (-)
Gene ID: Rep_2519_c_6_34
Type: CAZyme
Location: 33082 - 35802 (-)
Type: CAZyme
Location: 33082 - 35802 (-)
Gene ID: Rep_2519_c_6_35
Type: pfam
Location: 35814 - 36623 (-)
Type: pfam
Location: 35814 - 36623 (-)
Gene ID: Rep_2519_c_6_36
Type: CAZyme
Location: 36694 - 37692 (+)
Type: CAZyme
Location: 36694 - 37692 (+)
Gene ID: Rep_2519_c_6_37
Type: STP
Location: 37743 - 38303 (-)
Type: STP
Location: 37743 - 38303 (-)
Gene ID: Rep_2519_c_6_38
Type: TC
Location: 38358 - 39713 (-)
Type: TC
Location: 38358 - 39713 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
RGIG6154
Family
RGIG6154
Genus
RGIG6154
Species
RGIG6154 sp934457515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.