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Cluster: Rep_2519_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2519_c_35 Rep_2519_c_35_12 8641 9423 + 8.A.3.2.3
pfam Rep_2519_c_35 Rep_2519_c_35_13 9420 10130 + CpsB_CapC
TC Rep_2519_c_35 Rep_2519_c_35_14 10146 11594 + 9.B.18.1.2
CAZyme Rep_2519_c_35 Rep_2519_c_35_15 11619 12821 + GT4
CAZyme Rep_2519_c_35 Rep_2519_c_35_16 12835 14037 + GT4
pfam Rep_2519_c_35 Rep_2519_c_35_17 14043 15158 + Radical_SAM | SPASM
NULL(UNKNOWN) Rep_2519_c_35 Rep_2519_c_35_18 15219 15800 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2519_c_35 Rep_2519_c_35_19 15887 16540 + GT4
Gene ID: Rep_2519_c_35_12
Type: TC
Location: 8641 - 9423 (+)
Gene ID: Rep_2519_c_35_13
Type: pfam
Location: 9420 - 10130 (+)
Gene ID: Rep_2519_c_35_14
Type: TC
Location: 10146 - 11594 (+)
Gene ID: Rep_2519_c_35_15
Type: CAZyme
Location: 11619 - 12821 (+)
Gene ID: Rep_2519_c_35_16
Type: CAZyme
Location: 12835 - 14037 (+)
Gene ID: Rep_2519_c_35_17
Type: pfam
Location: 14043 - 15158 (+)
Gene ID: Rep_2519_c_35_18
Type:
Location: 15219 - 15800 (+)
Gene ID: Rep_2519_c_35_19
Type: CAZyme
Location: 15887 - 16540 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
RGIG6154
→
Family
RGIG6154
→
Genus
RGIG6154
→
Species
RGIG6154 sp934457515

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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