Cluster: Rep_249_CGC5
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_249
- CGC Family ID: CGCFAM_04552
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_249_c_18 | Rep_249_c_18_8 | 9395 | 12706 | - | 1.B.14.6.2 |
| TC | Rep_249_c_18 | Rep_249_c_18_9 | 13054 | 14514 | - | 2.A.25.1.5 |
| TC | Rep_249_c_18 | Rep_249_c_18_10 | 14578 | 15309 | - | 3.A.1.3.15 |
| TC | Rep_249_c_18 | Rep_249_c_18_11 | 15299 | 16783 | - | 3.A.1.3.15 |
| pfam | Rep_249_c_18 | Rep_249_c_18_12 | 16854 | 18587 | - | PDDEXK_9 | AAA-ATPase_like |
| pfam | Rep_249_c_18 | Rep_249_c_18_13 | 19165 | 19842 | - | DUF4294 |
| CAZyme | Rep_249_c_18 | Rep_249_c_18_14 | 20000 | 21202 | - | GT4 |
| pfam | Rep_249_c_18 | Rep_249_c_18_15 | 21475 | 22401 | + | LicD |
| CAZyme | Rep_249_c_18 | Rep_249_c_18_16 | 22491 | 23498 | - | GT2 |
| pfam | Rep_249_c_18 | Rep_249_c_18_17 | 23505 | 24200 | - | Glycos_transf_2 | Glyco_transf_7C |
| CAZyme | Rep_249_c_18 | Rep_249_c_18_18 | 24618 | 25709 | - | GT4 |
| pfam | Rep_249_c_18 | Rep_249_c_18_19 | 25730 | 26485 | - | Kdo |
| CAZyme | Rep_249_c_18 | Rep_249_c_18_20 | 26572 | 27624 | - | GT113 |
| pfam | Rep_249_c_18 | Rep_249_c_18_21 | 27660 | 28601 | - | Lip_A_acyltrans |
| TC | Rep_249_c_18 | Rep_249_c_18_22 | 28624 | 30444 | - | 3.A.1.106.1 |
Gene ID: Rep_249_c_18_8
Type: TC
Location: 9395 - 12706 (-)
Type: TC
Location: 9395 - 12706 (-)
Gene ID: Rep_249_c_18_9
Type: TC
Location: 13054 - 14514 (-)
Type: TC
Location: 13054 - 14514 (-)
Gene ID: Rep_249_c_18_10
Type: TC
Location: 14578 - 15309 (-)
Type: TC
Location: 14578 - 15309 (-)
Gene ID: Rep_249_c_18_11
Type: TC
Location: 15299 - 16783 (-)
Type: TC
Location: 15299 - 16783 (-)
Gene ID: Rep_249_c_18_12
Type: pfam
Location: 16854 - 18587 (-)
Type: pfam
Location: 16854 - 18587 (-)
Gene ID: Rep_249_c_18_13
Type: pfam
Location: 19165 - 19842 (-)
Type: pfam
Location: 19165 - 19842 (-)
Gene ID: Rep_249_c_18_14
Type: CAZyme
Location: 20000 - 21202 (-)
Type: CAZyme
Location: 20000 - 21202 (-)
Gene ID: Rep_249_c_18_15
Type: pfam
Location: 21475 - 22401 (+)
Type: pfam
Location: 21475 - 22401 (+)
Gene ID: Rep_249_c_18_16
Type: CAZyme
Location: 22491 - 23498 (-)
Type: CAZyme
Location: 22491 - 23498 (-)
Gene ID: Rep_249_c_18_17
Type: pfam
Location: 23505 - 24200 (-)
Type: pfam
Location: 23505 - 24200 (-)
Gene ID: Rep_249_c_18_18
Type: CAZyme
Location: 24618 - 25709 (-)
Type: CAZyme
Location: 24618 - 25709 (-)
Gene ID: Rep_249_c_18_19
Type: pfam
Location: 25730 - 26485 (-)
Type: pfam
Location: 25730 - 26485 (-)
Gene ID: Rep_249_c_18_20
Type: CAZyme
Location: 26572 - 27624 (-)
Type: CAZyme
Location: 26572 - 27624 (-)
Gene ID: Rep_249_c_18_21
Type: pfam
Location: 27660 - 28601 (-)
Type: pfam
Location: 27660 - 28601 (-)
Gene ID: Rep_249_c_18_22
Type: TC
Location: 28624 - 30444 (-)
Type: TC
Location: 28624 - 30444 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900317685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.