Cluster: Rep_249_CGC41
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: xylan/beta-glucan
- Genome ID: Rep_249
- CGC Family ID: CGCFAM_00116
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_249_c_167 | Rep_249_c_167_1 | 327 | 1970 | - | GH29 |
| CAZyme | Rep_249_c_167 | Rep_249_c_167_2 | 2286 | 4484 | + | GH115 |
| pfam | Rep_249_c_167 | Rep_249_c_167_3 | 4484 | 4864 | + | GH115_C |
| CAZyme | Rep_249_c_167 | Rep_249_c_167_4 | 5066 | 8056 | - | GH98 |
| CAZyme | Rep_249_c_167 | Rep_249_c_167_5 | 8170 | 9864 | - | GH10 |
| pfam | Rep_249_c_167 | Rep_249_c_167_6 | 9925 | 10908 | - | BT_3987-like_N | DUF5627 |
| pfam | Rep_249_c_167 | Rep_249_c_167_7 | 11035 | 12807 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_249_c_167 | Rep_249_c_167_8 | 12832 | 15651 | - | 1.B.14.6.1 |
| pfam | Rep_249_c_167 | Rep_249_c_167_9 | 15697 | 17574 | - | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_249_c_167 | Rep_249_c_167_10 | 17624 | 19747 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_249_c_167 | Rep_249_c_167_11 | 19751 | 20800 | - | 1.B.14.6.1 |
Gene ID: Rep_249_c_167_1
Type: CAZyme
Location: 327 - 1970 (-)
Type: CAZyme
Location: 327 - 1970 (-)
Gene ID: Rep_249_c_167_2
Type: CAZyme
Location: 2286 - 4484 (+)
Type: CAZyme
Location: 2286 - 4484 (+)
Gene ID: Rep_249_c_167_3
Type: pfam
Location: 4484 - 4864 (+)
Type: pfam
Location: 4484 - 4864 (+)
Gene ID: Rep_249_c_167_4
Type: CAZyme
Location: 5066 - 8056 (-)
Type: CAZyme
Location: 5066 - 8056 (-)
Gene ID: Rep_249_c_167_5
Type: CAZyme
Location: 8170 - 9864 (-)
Type: CAZyme
Location: 8170 - 9864 (-)
Gene ID: Rep_249_c_167_6
Type: pfam
Location: 9925 - 10908 (-)
Type: pfam
Location: 9925 - 10908 (-)
Gene ID: Rep_249_c_167_7
Type: pfam
Location: 11035 - 12807 (-)
Type: pfam
Location: 11035 - 12807 (-)
Gene ID: Rep_249_c_167_8
Type: TC
Location: 12832 - 15651 (-)
Type: TC
Location: 12832 - 15651 (-)
Gene ID: Rep_249_c_167_9
Type: pfam
Location: 15697 - 17574 (-)
Type: pfam
Location: 15697 - 17574 (-)
Gene ID: Rep_249_c_167_10
Type:
Location: 17624 - 19747 (-)
Type:
Location: 17624 - 19747 (-)
Gene ID: Rep_249_c_167_11
Type: TC
Location: 19751 - 20800 (-)
Type: TC
Location: 19751 - 20800 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900317685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.