Cluster: Rep_249_CGC30
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_249
- CGC Family ID: CGCFAM_02542
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_249_c_127 | Rep_249_c_127_18 | 20346 | 22721 | + | 1.B.14.6.7 |
| CAZyme | Rep_249_c_127 | Rep_249_c_127_19 | 22824 | 24377 | - | GH30_4 |
| CAZyme | Rep_249_c_127 | Rep_249_c_127_20 | 24418 | 26166 | - | GH30_4 |
| sulfatase | Rep_249_c_127 | Rep_249_c_127_21 | 26325 | 27917 | - | S1_27 |
| TC | Rep_249_c_127 | Rep_249_c_127_22 | 27936 | 30959 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_249_c_127 | Rep_249_c_127_23 | 30996 | 32459 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_249_c_127 | Rep_249_c_127_24 | 32721 | 36854 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_249_c_127 | Rep_249_c_127_25 | 36895 | 39693 | - | GH2 |
| CAZyme | Rep_249_c_127 | Rep_249_c_127_26 | 39690 | 41735 | - | GH35 |
| CAZyme | Rep_249_c_127 | Rep_249_c_127_27 | 41780 | 43285 | - | GH2 |
| CAZyme | Rep_249_c_127 | Rep_249_c_127_28 | 43228 | 44397 | - | GH2 |
| STP | Rep_249_c_127 | Rep_249_c_127_29 | 44417 | 47671 | - | TPR_2 |
| TC | Rep_249_c_127 | Rep_249_c_127_30 | 47715 | 48998 | - | 2.A.1.1.55 |
Gene ID: Rep_249_c_127_18
Type: TC
Location: 20346 - 22721 (+)
Type: TC
Location: 20346 - 22721 (+)
Gene ID: Rep_249_c_127_19
Type: CAZyme
Location: 22824 - 24377 (-)
Type: CAZyme
Location: 22824 - 24377 (-)
Gene ID: Rep_249_c_127_20
Type: CAZyme
Location: 24418 - 26166 (-)
Type: CAZyme
Location: 24418 - 26166 (-)
Gene ID: Rep_249_c_127_21
Type: sulfatase
Location: 26325 - 27917 (-)
Type: sulfatase
Location: 26325 - 27917 (-)
Gene ID: Rep_249_c_127_22
Type: TC
Location: 27936 - 30959 (-)
Type: TC
Location: 27936 - 30959 (-)
Gene ID: Rep_249_c_127_23
Type:
Location: 30996 - 32459 (-)
Type:
Location: 30996 - 32459 (-)
Gene ID: Rep_249_c_127_24
Type: TF
Location: 32721 - 36854 (+)
Type: TF
Location: 32721 - 36854 (+)
Gene ID: Rep_249_c_127_25
Type: CAZyme
Location: 36895 - 39693 (-)
Type: CAZyme
Location: 36895 - 39693 (-)
Gene ID: Rep_249_c_127_26
Type: CAZyme
Location: 39690 - 41735 (-)
Type: CAZyme
Location: 39690 - 41735 (-)
Gene ID: Rep_249_c_127_27
Type: CAZyme
Location: 41780 - 43285 (-)
Type: CAZyme
Location: 41780 - 43285 (-)
Gene ID: Rep_249_c_127_28
Type: CAZyme
Location: 43228 - 44397 (-)
Type: CAZyme
Location: 43228 - 44397 (-)
Gene ID: Rep_249_c_127_29
Type: STP
Location: 44417 - 47671 (-)
Type: STP
Location: 44417 - 47671 (-)
Gene ID: Rep_249_c_127_30
Type: TC
Location: 47715 - 48998 (-)
Type: TC
Location: 47715 - 48998 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900317685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.