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Cluster: Rep_249_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_249_c_82 Rep_249_c_82_27 40670 43849 + 1.B.14.6.2
pfam Rep_249_c_82 Rep_249_c_82_28 43884 45536 + SusD_RagB | SusD-like_3
CAZyme Rep_249_c_82 Rep_249_c_82_29 45647 47533 + GH2
NULL(UNKNOWN) Rep_249_c_82 Rep_249_c_82_30 47540 49642 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_249_c_82 Rep_249_c_82_31 49639 51969 + CBM67 | GH78
CAZyme Rep_249_c_82 Rep_249_c_82_32 51974 56257 + GH106 | GH43_24
CAZyme Rep_249_c_82 Rep_249_c_82_33 56483 58828 + GH3
CAZyme Rep_249_c_82 Rep_249_c_82_34 58980 60287 - GH2
Gene ID: Rep_249_c_82_27
Type: TC
Location: 40670 - 43849 (+)
Gene ID: Rep_249_c_82_28
Type: pfam
Location: 43884 - 45536 (+)
Gene ID: Rep_249_c_82_29
Type: CAZyme
Location: 45647 - 47533 (+)
Gene ID: Rep_249_c_82_30
Type:
Location: 47540 - 49642 (+)
Gene ID: Rep_249_c_82_31
Type: CAZyme
Location: 49639 - 51969 (+)
Gene ID: Rep_249_c_82_32
Type: CAZyme
Location: 51974 - 56257 (+)
Gene ID: Rep_249_c_82_33
Type: CAZyme
Location: 56483 - 58828 (+)
Gene ID: Rep_249_c_82_34
Type: CAZyme
Location: 58980 - 60287 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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