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Cluster: Rep_2488_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2488_c_10 Rep_2488_c_10_19 15049 17088 + GH42
peptidase Rep_2488_c_10 Rep_2488_c_10_20 17218 18414 - C110.UPW
TC Rep_2488_c_10 Rep_2488_c_10_21 19267 21183 - 9.A.8.1.6
TC Rep_2488_c_10 Rep_2488_c_10_22 21403 24030 - 3.A.3.2.21
NULL(UNKNOWN) Rep_2488_c_10 Rep_2488_c_10_23 24383 25183 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2488_c_10 Rep_2488_c_10_24 25199 26611 + GD_AH_second | SAF | GD_AH_C
CAZyme Rep_2488_c_10 Rep_2488_c_10_25 26738 27493 + CE4
CAZyme Rep_2488_c_10 Rep_2488_c_10_26 27584 28519 + GH43_26
NULL(UNKNOWN) Rep_2488_c_10 Rep_2488_c_10_27 28516 29718 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2488_c_10 Rep_2488_c_10_28 29720 32848 + 9.B.74.1.1
Gene ID: Rep_2488_c_10_19
Type: CAZyme
Location: 15049 - 17088 (+)
Gene ID: Rep_2488_c_10_20
Type: peptidase
Location: 17218 - 18414 (-)
Gene ID: Rep_2488_c_10_21
Type: TC
Location: 19267 - 21183 (-)
Gene ID: Rep_2488_c_10_22
Type: TC
Location: 21403 - 24030 (-)
Gene ID: Rep_2488_c_10_23
Type:
Location: 24383 - 25183 (+)
Gene ID: Rep_2488_c_10_24
Type: pfam
Location: 25199 - 26611 (+)
Gene ID: Rep_2488_c_10_25
Type: CAZyme
Location: 26738 - 27493 (+)
Gene ID: Rep_2488_c_10_26
Type: CAZyme
Location: 27584 - 28519 (+)
Gene ID: Rep_2488_c_10_27
Type:
Location: 28516 - 29718 (+)
Gene ID: Rep_2488_c_10_28
Type: TC
Location: 29720 - 32848 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
UBA1381
→
Family
UBA1381
→
Genus
HGM11530
→
Species
HGM11530 sp900751685

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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