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Cluster: Rep_2488_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2488_c_9 Rep_2488_c_9_2 1297 7317 + CBM6 | GH2
CAZyme Rep_2488_c_9 Rep_2488_c_9_3 7484 11998 + GH28
CAZyme Rep_2488_c_9 Rep_2488_c_9_4 12103 16857 + CBM67 | GH78
CAZyme Rep_2488_c_9 Rep_2488_c_9_5 16877 23260 + CE12 | CE12 | CE20
TF Rep_2488_c_9 Rep_2488_c_9_6 23340 24191 - HTH_AraC | HTH_AraC
CAZyme Rep_2488_c_9 Rep_2488_c_9_7 24346 28263 + CE12
NULL(UNKNOWN) Rep_2488_c_9 Rep_2488_c_9_8 28379 29206 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2488_c_9 Rep_2488_c_9_9 29228 31027 - 2.A.21.9.1
Gene ID: Rep_2488_c_9_2
Type: CAZyme
Location: 1297 - 7317 (+)
Gene ID: Rep_2488_c_9_3
Type: CAZyme
Location: 7484 - 11998 (+)
Gene ID: Rep_2488_c_9_4
Type: CAZyme
Location: 12103 - 16857 (+)
Gene ID: Rep_2488_c_9_5
Type: CAZyme
Location: 16877 - 23260 (+)
Gene ID: Rep_2488_c_9_6
Type: TF
Location: 23340 - 24191 (-)
Gene ID: Rep_2488_c_9_7
Type: CAZyme
Location: 24346 - 28263 (+)
Gene ID: Rep_2488_c_9_8
Type:
Location: 28379 - 29206 (-)
Gene ID: Rep_2488_c_9_9
Type: TC
Location: 29228 - 31027 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
UBA1381
→
Family
UBA1381
→
Genus
HGM11530
→
Species
HGM11530 sp900751685

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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