Cluster: Rep_2488_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2488
- CGC Family ID: CGCFAM_00141
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2488_c_4 | Rep_2488_c_4_30 | 35262 | 38621 | - | CBM67 | GH78 |
| CAZyme | Rep_2488_c_4 | Rep_2488_c_4_31 | 38659 | 43488 | - | GH28 |
| NULL(UNKNOWN) | Rep_2488_c_4 | Rep_2488_c_4_32 | 43519 | 43632 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2488_c_4 | Rep_2488_c_4_33 | 43762 | 44583 | + | HTH_AraC | HTH_AraC |
| TC | Rep_2488_c_4 | Rep_2488_c_4_34 | 44963 | 45805 | - | 3.A.1.9.2 |
| TC | Rep_2488_c_4 | Rep_2488_c_4_35 | 45805 | 46608 | - | 3.A.1.9.2 |
| TC | Rep_2488_c_4 | Rep_2488_c_4_36 | 46601 | 47383 | - | 3.A.1.9.2 |
Gene ID: Rep_2488_c_4_30
Type: CAZyme
Location: 35262 - 38621 (-)
Type: CAZyme
Location: 35262 - 38621 (-)
Gene ID: Rep_2488_c_4_31
Type: CAZyme
Location: 38659 - 43488 (-)
Type: CAZyme
Location: 38659 - 43488 (-)
Gene ID: Rep_2488_c_4_32
Type:
Location: 43519 - 43632 (-)
Type:
Location: 43519 - 43632 (-)
Gene ID: Rep_2488_c_4_33
Type: TF
Location: 43762 - 44583 (+)
Type: TF
Location: 43762 - 44583 (+)
Gene ID: Rep_2488_c_4_34
Type: TC
Location: 44963 - 45805 (-)
Type: TC
Location: 44963 - 45805 (-)
Gene ID: Rep_2488_c_4_35
Type: TC
Location: 45805 - 46608 (-)
Type: TC
Location: 45805 - 46608 (-)
Gene ID: Rep_2488_c_4_36
Type: TC
Location: 46601 - 47383 (-)
Type: TC
Location: 46601 - 47383 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
HGM11530
Species
HGM11530 sp900751685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.