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Cluster: Rep_2488_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2488_c_46 Rep_2488_c_46_17 13170 14579 - GH1
TC Rep_2488_c_46 Rep_2488_c_46_18 14580 16460 - 4.A.1.2.11
pfam Rep_2488_c_46 Rep_2488_c_46_19 16625 16870 - MazG | MazG-like
NULL(UNKNOWN) Rep_2488_c_46 Rep_2488_c_46_20 17000 17308 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2488_c_46 Rep_2488_c_46_21 17357 19042 - GH154
TF Rep_2488_c_46 Rep_2488_c_46_22 19287 20144 + HTH_AraC | HTH_AraC
pfam Rep_2488_c_46 Rep_2488_c_46_23 20237 20782 - GSHPx | AhpC-TSA
TC Rep_2488_c_46 Rep_2488_c_46_24 20918 21586 + 9.B.143.2.3
TC Rep_2488_c_46 Rep_2488_c_46_25 21733 22914 + 2.A.36.2.1
Gene ID: Rep_2488_c_46_17
Type: CAZyme
Location: 13170 - 14579 (-)
Gene ID: Rep_2488_c_46_18
Type: TC
Location: 14580 - 16460 (-)
Gene ID: Rep_2488_c_46_19
Type: pfam
Location: 16625 - 16870 (-)
Gene ID: Rep_2488_c_46_20
Type:
Location: 17000 - 17308 (-)
Gene ID: Rep_2488_c_46_21
Type: CAZyme
Location: 17357 - 19042 (-)
Gene ID: Rep_2488_c_46_22
Type: TF
Location: 19287 - 20144 (+)
Gene ID: Rep_2488_c_46_23
Type: pfam
Location: 20237 - 20782 (-)
Gene ID: Rep_2488_c_46_24
Type: TC
Location: 20918 - 21586 (+)
Gene ID: Rep_2488_c_46_25
Type: TC
Location: 21733 - 22914 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
UBA1381
→
Family
UBA1381
→
Genus
HGM11530
→
Species
HGM11530 sp900751685

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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