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Cluster: Rep_2488_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2488_c_25 Rep_2488_c_25_3 3335 8668 + CBM57 | CBM91 | GH43_10 | GH51_2
TF Rep_2488_c_25 Rep_2488_c_25_4 8751 9617 - HTH_AraC
CAZyme Rep_2488_c_25 Rep_2488_c_25_5 9988 14601 + GH95
NULL(UNKNOWN) Rep_2488_c_25 Rep_2488_c_25_6 14918 15646 + NULL(UNKNOWN)
[View Structural Homologs]
sulfatase Rep_2488_c_25 Rep_2488_c_25_7 15804 16955 + S1_8
TC Rep_2488_c_25 Rep_2488_c_25_8 17085 18764 - 2.A.66.2.14
pfam Rep_2488_c_25 Rep_2488_c_25_9 19006 20253 + tRNA-synt_2b | HGTP_anticodon | tRNA-synt_His
pfam Rep_2488_c_25 Rep_2488_c_25_10 20255 22039 + tRNA-synt_2 | tRNA_anti-codon | GAD
TC Rep_2488_c_25 Rep_2488_c_25_11 22133 23101 + 3.A.1.132.1
TC Rep_2488_c_25 Rep_2488_c_25_12 23098 23802 + 3.A.1.132.4
Gene ID: Rep_2488_c_25_3
Type: CAZyme
Location: 3335 - 8668 (+)
Gene ID: Rep_2488_c_25_4
Type: TF
Location: 8751 - 9617 (-)
Gene ID: Rep_2488_c_25_5
Type: CAZyme
Location: 9988 - 14601 (+)
Gene ID: Rep_2488_c_25_6
Type:
Location: 14918 - 15646 (+)
Gene ID: Rep_2488_c_25_7
Type: sulfatase
Location: 15804 - 16955 (+)
Gene ID: Rep_2488_c_25_8
Type: TC
Location: 17085 - 18764 (-)
Gene ID: Rep_2488_c_25_9
Type: pfam
Location: 19006 - 20253 (+)
Gene ID: Rep_2488_c_25_10
Type: pfam
Location: 20255 - 22039 (+)
Gene ID: Rep_2488_c_25_11
Type: TC
Location: 22133 - 23101 (+)
Gene ID: Rep_2488_c_25_12
Type: TC
Location: 23098 - 23802 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
UBA1381
→
Family
UBA1381
→
Genus
HGM11530
→
Species
HGM11530 sp900751685

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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